Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g00880 atggaagaagatgaagataacaGAAGAAGAATCCTCGAAAGAGAACGATACCAAATCGAACAGATTCTCCAGCTCGATCTCGAGGAATTGCAAGTCGAAGAAGTCGATGATTTTCACTATTCTTCCGACGacgacgacaacaacaacaaccttgaTCTTACTCGTGGATTTGGCAGTGCAGGCGTTGTCCCGGGTGAATTCACTTACAATACTTGTATAGCATCCTTACATACATATCTTGGTGATGTTGAAGACACGCATCACAGCTCAACTTTTTTGGATGGTGGGGCTGTATTGACTCTTCCGCTTTTTTGTCTTGAAGGAGTTGTACTCTTTCCTGGGGCTACTCTTCCCTTGAGAGTTATTGAATCCAATTTTGTGGCTGCTGTTGAGAGATCTCTGAGTCAAGTTGACGCCCGTTACACCATTGGCGTGATTCGAGTTTACAGTGATACTGCAACTCGTAGGATGAAAACCGCAAGCATCGGGACGACTGCAGAGATTCGACAATACGGGCGCCTAGAGGATGGTTCCCTGAATGTGGTTACTCGTGGACAACAACGCTTTCGCTTAAAACGGTGTTGGATTGATGTGGAAGGAGTGCCTTATGGAGAGATCCAAATTATTGAGGAAGACATACCATCGCGAACTCCAAGGGACGTTTTTGGAAAATTAACACCCCTGAGTAATCTGCCCTGTAACCGTGCCACCTCAAGCATGTTGCCTTCGAAGAATTCTGTTGATGGACAGGGTTCTGAAAACGAGGAAAGTGATACAGAAGAGAGCTTTGAGAATGAACTTTCATCAACAGAGAGAAGAATCCATCAATCTCTCATTCGTTCCAGTTTTGAATATGATGAATTAGCGAGCAGTAGTGATGATAAATTGACATATGAGTCTGATCAGGAAATGAGATCCGATCTAAATGACTCAGTCACCTCAACACCATTGCTACCTGACCATGAAAAAGATGCAGAAAATCTGGATTCTATAATTGGGAGCTGTTCCTCTTCTGGAAAACAGTCCTCCATCAGAGAACGGCTTAATTGGTGTTCTAAAAATAAAGACCCATACTCCTCACATAGAGTTTCAAAAGCGTTCTTGCATGGTTGGGTGTATCGTATGTTTGACTCCTATTTGCTTGCACAAAGGGCTGCAGATATGTGGAAGCAAATCATTCGTGCACCAAGCATGGATGCTCTTGTTAAGCAGCCTGATGTTTTATCATTTTCTATCGGCAGTAAAATACCTGTTTCTGAATCTACAAGGCAGGAGCTTTTGGATATTGATGGAATCTCATATAGATTGCGTAGGGAAATTGAATTACTAGAAAGCATTGATCTAATTCAATGTAAAATCTGTAAGaTTATAATCGCAAAGCGGAGCGATATGTTGGTGATGTCTAGTGAGGGTCCTCTTGGTGCATATGTAAATGCATCCGGTTATGTACATGAGATAACGACTTTGTACAAGGCAAATGGATTAGCTCTAACTGGGCCAGCATTAACAAATTACAGTTGGTTTCCGGGGTATGCATGGACAATTGCTAACTGTGCCACGTGTGAAACCCATATGGGGTGGCTTTTTACAGCCACGAAAAGAAAACTGAAACCAAAGTCATTTTGGGGTATACGTAACTGTCAAGTTGCAGAAGAAATGTGCTAA 1665 0.4132 MEEDEDNRRRILERERYQIEQILQLDLEELQVEEVDDFHYSSDDDDNNNNLDLTRGFGSAGVVPGEFTYNTCIASLHTYLGDVEDTHHSSTFLDGGAVLTLPLFCLEGVVLFPGATLPLRVIESNFVAAVERSLSQVDARYTIGVIRVYSDTATRRMKTASIGTTAEIRQYGRLEDGSLNVVTRGQQRFRLKRCWIDVEGVPYGEIQIIEEDIPSRTPRDVFGKLTPLSNLPCNRATSSMLPSKNSVDGQGSENEESDTEESFENELSSTERRIHQSLIRSSFEYDELASSSDDKLTYESDQEMRSDLNDSVTSTPLLPDHEKDAENLDSIIGSCSSSGKQSSIRERLNWCSKNKDPYSSHRVSKAFLHGWVYRMFDSYLLAQRAADMWKQIIRAPSMDALVKQPDVLSFSIGSKIPVSESTRQELLDIDGISYRLRREIELLESIDLIQCKICKIIIAKRSDMLVMSSEGPLGAYVNASGYVHEITTLYKANGLALTGPALTNYSWFPGYAWTIANCATCETHMGWLFTATKRKLKPKSFWGIRNCQVAEEMC 554
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g00880 554 Gene3D Peptide methionine sulfoxide reductase. 442 554 - -
Tsu01g00880 554 ProSiteProfiles CULT domain profile. 446 553 IPR034750 -
Tsu01g00880 554 Pfam Yippee zinc-binding/DNA-binding /Mis18, centromere assembly 448 540 IPR004910 -
Tsu01g00880 554 MobiDBLite consensus disorder prediction 233 271 - -
Tsu01g00880 554 Gene3D - 377 441 - -
Tsu01g00880 554 PANTHER CEREBLON 10 548 - -
Tsu01g00880 554 SMART lon_5 100 445 IPR003111 -
Tsu01g00880 554 Pfam ATP-dependent protease La (LON) substrate-binding domain 100 444 IPR003111 -
Tsu01g00880 554 MobiDBLite consensus disorder prediction 292 306 - -
Tsu01g00880 554 PANTHER BNAA09G40760D PROTEIN 10 548 - -
Tsu01g00880 554 CDD CRBN_C_like 459 545 IPR034750 -
Tsu01g00880 554 SUPERFAMILY PUA domain-like 100 444 IPR015947 -
Tsu01g00880 554 MobiDBLite consensus disorder prediction 292 320 - -
Tsu01g00880 554 ProSiteProfiles Lon N-terminal domain profile. 101 445 IPR003111 -
Tsu01g00880 554 MobiDBLite consensus disorder prediction 233 252 - -
Tsu01g00880 554 Gene3D - 81 209 IPR046336 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g00880 Tsu-Chr1 8009334 8016821 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g00880 K11793 - pop:7463779 615.15
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g00880 01 8009334 8016821 Tsu01g00880 01 8009334 8016821 ECH