Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g00875 ATGCTTGTTTTTCAGGTAAATAAAGGAAAGAGCTCGCTTAGTAGTGTACATGAAATGATTGATAACACGCAATTGCCTTTCGGCGAGTCACATTTCGGTTTGTTAATGGAGAACCTTGATGTTTTAGAAGAAACTTTTGCAGATTCTGAAGCATTAAGGTTGAAAAAGAATATTATATTGCAACTAGAAAAGCTTGGAGCTCTTGAGTTGTTCAATGTTTGTCTAACAGCATCTTCCGGAACCTCATCCGTATCGGCATGCACTGACGGAGTTCTTGAACAAGTTGAATTGAATAAGAGAAACCTCAAAGTAGATGACTATACAGGTAAAGTTGTTGTCCAATCTAGCAAGAGGAAGGAAAATAGAACAAGAAGAAAGAGAGGGTCGGTGTCCATAGCACCTTCCTCTAAGTCCTTGCCTTTAGAAGATAATCAAGAAGATCCATTACGTTCTTCGCCGGCGGCTTCTTTTGTAAAAAGACCATCAAATACTAAAAATAGAAGAGCAACTGCTCAAAGGGAGGTGGAAATGGCAAATGGTGTAAAGGTTTTAGCAGAGTTAGAGAAAATGAGAACAGCTATAGAAGAGGATACGAAACAAGCAGTAAGGATGAGTAGTTGGGCAGAAGCATCTGGAGTCGATGAGAAAGTGCTAAAACAGCAACTGTATCATGGCTATTACTGTAAAGAAGAGTTGATACGGAGCACTCGTTCCTTAGTTCTATACTTTGCCAGAAAATACAGGGGCTCGGGAATAGCTTTGGAAGATTTGCTTCAGGTAGGATACATAGGTGTTCTCCAAGGAGCAGAGCGATTTGACATTACAAGGGGATACCAATTCTCAACATATGTGCAGCACTGGATAAGAAAATCAATGTCAAAAATGGTGGCAAAATATGCTCGAGGAATCACTGTTCCTTGGTCAATGAACAAGGCAATAAATCAGATCAAGAAAGCACGAAAAGTCTTGAGAAGTACGTCTATGAAATACCCTGATAATCATGAAATTGCAAAGATGACAGGTCTTTCACTTGATAGAATCATATCAGCTAGCCATTGTTTGAGAGCAGTTTCTTCAATGAATCGTGGCGTAGAATATATGGGTTATATGCCGGATTTGTTGATAGAGAATCCTGAAAAGACTGTGATGAAACAACACATTAAAAAAGATATACATGATATCCTCCAAAGTTTGGACTCAAGAGAGAGGCAAATACTAATCCTACGATTTGGCCTTAATGATCACAAACCTAAGTCTCTTGAATATATAGGGAGGATTTACAAAGTTAGCAAAGCATGGATATGgcaaatagagaaaaaagcTCTGACAAAATTAAGGAATGAAAAAAACATCTCAAAGTTGAATTATTATTTGGATCTGTAG 1383 0.3774 MLVFQVNKGKSSLSSVHEMIDNTQLPFGESHFGLLMENLDVLEETFADSEALRLKKNIILQLEKLGALELFNVCLTASSGTSSVSACTDGVLEQVELNKRNLKVDDYTGKVVVQSSKRKENRTRRKRGSVSIAPSSKSLPLEDNQEDPLRSSPAASFVKRPSNTKNRRATAQREVEMANGVKVLAELEKMRTAIEEDTKQAVRMSSWAEASGVDEKVLKQQLYHGYYCKEELIRSTRSLVLYFARKYRGSGIALEDLLQVGYIGVLQGAERFDITRGYQFSTYVQHWIRKSMSKMVAKYARGITVPWSMNKAINQIKKARKVLRSTSMKYPDNHEIAKMTGLSLDRIISASHCLRAVSSMNRGVEYMGYMPDLLIENPEKTVMKQHIKKDIHDILQSLDSRERQILILRFGLNDHKPKSLEYIGRIYKVSKAWIWQIEKKALTKLRNEKNISKLNYYLDL 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g00875 460 Gene3D - 376 455 IPR036388 -
Tsu01g00875 460 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 361 449 IPR013324 -
Tsu01g00875 460 CDD Sigma70_r4 388 446 - -
Tsu01g00875 460 MobiDBLite consensus disorder prediction 128 142 - -
Tsu01g00875 460 TIGRFAM sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 230 448 IPR014284 GO:0003700|GO:0006352|GO:0006355
Tsu01g00875 460 Pfam Sigma-70, region 4 395 447 IPR007630 GO:0003700|GO:0006352|GO:0006355
Tsu01g00875 460 Gene3D - 96 301 - -
Tsu01g00875 460 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 305 361 IPR013324 -
Tsu01g00875 460 PANTHER RNA POLYMERASE SIGMA FACTOR RPO 16 459 - -
Tsu01g00875 460 PRINTS Major sigma-70 factor signature 419 434 IPR000943 GO:0003700|GO:0006352|GO:0006355
Tsu01g00875 460 PRINTS Major sigma-70 factor signature 280 288 IPR000943 GO:0003700|GO:0006352|GO:0006355
Tsu01g00875 460 PRINTS Major sigma-70 factor signature 256 269 IPR000943 GO:0003700|GO:0006352|GO:0006355
Tsu01g00875 460 PRINTS Major sigma-70 factor signature 398 410 IPR000943 GO:0003700|GO:0006352|GO:0006355
Tsu01g00875 460 PRINTS Major sigma-70 factor signature 434 445 IPR000943 GO:0003700|GO:0006352|GO:0006355
Tsu01g00875 460 SUPERFAMILY Sigma2 domain of RNA polymerase sigma factors 170 301 IPR013325 GO:0003700|GO:0006352|GO:0006355
Tsu01g00875 460 Pfam Sigma-70 region 2 232 300 IPR007627 GO:0003700|GO:0006352|GO:0006355
Tsu01g00875 460 MobiDBLite consensus disorder prediction 113 171 - -
Tsu01g00875 460 PANTHER RNA POLYMERASE SIGMA FACTOR SIGC 16 459 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g00875 Tsu-Chr1 7941151 7945391 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g00875 K03093 - gmx:100802522 586.26
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g00875 01 7941151 7945391 Tsu01g00875 01 7941151 7945391 ECH