Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g00792 ATGTATGAACCAAAGAACATTCTGATAACTGGAGCTGCTGGCTTCATAGCTTCACATGTAACCACTAGGCTAATTAATAGGTATCCTAGCTACAAGATTGTAGCTCTTGATAAGCTAGATTATTGTTCAAATTTCAAGAATCTACAATCATGCACATCATCAGCaaagttcaaattcatcaaGGGTGATATATGTTCAGCTGATATTGTGAATCATCTATTAATAGAAGAGGAAATAGACACAATCATGCATTTTGCTGCACAAACTCATGTTGATAATTCATTCGGAAACTCGATGGAATTCACCTACAATAACATATATGGAACACATGTTCTTCTTGAAGCATGTAGAGCTACAAATTGTGTTAAAAGGTTCATTCATGTTAGTACTGATGAAGTTTATGGTGAAACCGATTTAGATACCGAAATAGGAAACCATGAAACATCTCAGCTTTTACCAACAAATCCTTATTCTGCTACAAAAGCAGGTGCTGAAATGTTGGTTATGGCTTATCATAGATCTTATGGTCTTCCAATTATAACCTCTAGAGGAAATAATGTTTATGGTCCTAACCAATATCCTGAAAAGCTTGTTCCTAAATTCATCTTACTTGCAATGAGAGGCGAAAAGTTGCCGATTCATGGTGATGGATCCAATGTTAGAAGCTATCTTCATTGTGGTGATGTTGCAGAAGCATTTGATGTTATACTTCATAAAGGAGTAATAGGTCAAGTTTATAATATTGGTACTCAAAAAGAAAGAAGTGTGTTAGATGTAGCTGAAGAAATTTGCAAACTTTTTAAATTGGATCCGAAAGGTGTAATTGAGTTTGTTCAAGATAGGCCTTTCAATGATAAGAGATATTTTTTGGATGATCAAAAGCTTAAGAAGCTTGGTTGGGAGGAGAAAACATCTTGGACAGAAGGACTTAAGATGACAATTGATTGGTACAAAAATAATCCTGACTGGTGGGGAGATGTATCGACCGCTTTGAACCCTCATCCGCGTTTCTCGGCGATCAATCTTTCCGATGAAGCTCAATGGTCTTTCCAATATGGATACTCAAGGCTTTTGAGGTCGTTTACTGATGTCGGCCGTAGGGATCCGGGTTTGAAGTTTTTGATATATGGTAGGACAGGTTGGATTGGTGGATTGTTAGGGAAGCTTTGTGATGAGGAGAGAATTTCTTGGGAGTATGGGAGAGGAAGATTACAAGATAGGAGATCACTTTTGGAGGATATAAAGAGGGTTATGCCAACACATGTTTTGAATGCAGCTGGTGTGACTGGAAGGCCTAATGTTGATTGGTGTGAATCACATAAAGTTGAAACAATAAGGACTAATGTAGTAGGGACACTAACTTTGGCTGATGTTTGCAAAGAAAGTGATATATATGTAATGAATTTTGCAACTGGTTGCATTTTTGAGTATGATAAAGAACATCCTCTAGGATCAGGCATTGGATTCAAGGAGGAGGATAAGCCAAATTTCATTGGTTCCTTTTATTCAAAGACAAAGGCCATGGTGGAGGAGATCTTAAAAGAATATGAAAATGTTTGCATATTGAGAGTTAGAATGCCAATATCATCAGATTTAAGCAATCCAAGAAACTTCATAACAAAGATCAGTCGTTACAACAAAGTGGTAAACATACCTAATAGCATGACAGTGCTAGATGAACTCTTACCAATATCAATTGAAATGGCTAAGAGAAACTTAAAAGGTATATGGAATTTCACAAATCCAGGAGTTATAAGTCACAATGAGATATTAGAATTGTATAGGGATTACATAGATCCTTCATTTAAATGGCAGAATTTTGATTTGGAGGAACAAGCTAAGGTAATTGTTGCACAAAGGAGTAACAATGAAATGGATGGTTCAAAGCTCAAAAAAGAGTTTCCTGAATTGTTATCTATCAAAGATTCTGTTATAAAGTTTGTGTTTGAGCCTAACAAGAAAACTTGA 1968 0.3582 MYEPKNILITGAAGFIASHVTTRLINRYPSYKIVALDKLDYCSNFKNLQSCTSSAKFKFIKGDICSADIVNHLLIEEEIDTIMHFAAQTHVDNSFGNSMEFTYNNIYGTHVLLEACRATNCVKRFIHVSTDEVYGETDLDTEIGNHETSQLLPTNPYSATKAGAEMLVMAYHRSYGLPIITSRGNNVYGPNQYPEKLVPKFILLAMRGEKLPIHGDGSNVRSYLHCGDVAEAFDVILHKGVIGQVYNIGTQKERSVLDVAEEICKLFKLDPKGVIEFVQDRPFNDKRYFLDDQKLKKLGWEEKTSWTEGLKMTIDWYKNNPDWWGDVSTALNPHPRFSAINLSDEAQWSFQYGYSRLLRSFTDVGRRDPGLKFLIYGRTGWIGGLLGKLCDEERISWEYGRGRLQDRRSLLEDIKRVMPTHVLNAAGVTGRPNVDWCESHKVETIRTNVVGTLTLADVCKESDIYVMNFATGCIFEYDKEHPLGSGIGFKEEDKPNFIGSFYSKTKAMVEEILKEYENVCILRVRMPISSDLSNPRNFITKISRYNKVVNIPNSMTVLDELLPISIEMAKRNLKGIWNFTNPGVISHNEILELYRDYIDPSFKWQNFDLEEQAKVIVAQRSNNEMDGSKLKKEFPELLSIKDSVIKFVFEPNKKT 655
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g00792 655 Pfam GDP-mannose 4,6 dehydratase 8 313 IPR016040 -
Tsu01g00792 655 PANTHER TRIFUNCTIONAL UDP-GLUCOSE 4,6-DEHYDRATASE/UDP-4-KETO-6-DEOXY-D-GLUCOSE 3,5-EPIMERASE/UDP-4-KETO-L-RHAMNOSE-REDUCTASE RHM3-LIKE 2 653 - -
Tsu01g00792 655 CDD dTDP_GD_SDR_e 5 322 IPR005888 GO:0008460|GO:0009225
Tsu01g00792 655 Gene3D - 365 655 - -
Tsu01g00792 655 CDD dTDP_HR_like_SDR_e 372 644 - -
Tsu01g00792 655 Gene3D - 7 311 - -
Tsu01g00792 655 Pfam RmlD substrate binding domain 372 544 IPR029903 -
Tsu01g00792 655 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 1 328 IPR036291 -
Tsu01g00792 655 Gene3D - 198 320 - -
Tsu01g00792 655 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 370 632 IPR036291 -
Tsu01g00792 655 PANTHER DTDP-D-GLUCOSE 4,6-DEHYDRATASE-RELATED 2 653 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g00792 Tsu-Chr1 7108821 7111114 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g00792 6 317 Miscellaneous Gene Families AT4G00110 25.970 1.46e-21 96.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g00792 K12450 - gmx:100789644 1240.33