LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Tsu01g00787	ATGCTTCTAAATCAAGCTTTCTCTTCATTCTACTCAAAGCCACTTCATTATTCATACATTCCTCTcacttcttgttcttcttcatcttctccaatACGGCGTCGTTCAGTGAAAACCTCAATTCCTCGCCAAACAAATCTCAAAATTCTCACAACACGCATAGTTCAACTCACTCGCCGTAAACAGCTTGGTCAGATTCTGAATGAAATTGAAGTTGCGAAGAAACAGTTTGGGAAGTTGAATACGATTGTTATGAATGCGGTTATTGAAGCTTGTGTTCGTTGCGGTGATATTGAATCGGCTATTAGGATTTTTGATGAGATGAAAAATCCTGAATCTTGTGGTGTGGATACTGTTACGTATGCTACAATTTTGAAGggTTTAGGCAAGGCACATAGATTTGATGAAGCTTTTCGATTACTTGAATCTGTCGAAAATGGTACTGCCGTGGGAAGTCCAAAGTTGTCAGCGCCATTGGTCTTCGGTTTGCTAAATGCCTTAACAGAAGCAGGAGACTTGCGTCGTGCAAATGGCCTCCTTGCCTGTTATGGTTCTGTGCTTCGTGAAGGCGAACATTTTTCAGTCTCAGTATACAACCTTCTAATAAAGGGGCATATAAACTCAGGCTGTCCTGACACTGCAATAAACATGCTCAATGAAATTTTACATCAAGGAATAATGCCTGACAGGCTCACATATAACACACTGATTTTAGCATGTGTTCAGAGCGAAAAGTTGGATGTTGCCATGCAATTATTTGCGGAAATGAAGgaAAAAGCGCAGAAATTCATCCATGGTGATCTGTTTCCAGATATTGTTACATACACAACATTGCTCAAGGGTTTTGGGCAGGCAAAGGATCTCGTTTCAGTTGTGCAAATGGTGCTGGAAATGAAATCACGTTCTGAGTTATACATTGATAGAACTGCTTACACTACAATGGTTGATGCTTTACTAAGTTGTGGCTCTGTTAAGGGTGCTCTGTGTATTTTTGGAGTAATACAGAAGCAGATTGGTTGTAATCCAGAGTTGAGACCAAAGCCTCATCTCTATCTTTCTCTGATGCGTGCCTTTGCTTTTCGAGGAGATTATGATCTGGTTAAAAATTTGCATAAGCGGATTTTACCAGATACAGTAGGAACCATCCTACCAGTTTCCCGAGAAGAAGCCGACCACCTTCTAATGGAAGCTGCCCTGAATGCTGGCCAGGTTGATGTTGCTATTAAAACTCTTACATATATTCTTTCAAGATGGAAAGGCATATCTTGGACAAGTCATGGAGGCATGGTTGCTTCTCGTATTGAGGCCTTATTGGGATTCTCGGCATCTTTATTCAATCCTTTCTTACTTCCTCAGGTTTTGCCTTCTGAACCGATTGAGGGTTTCATGATACCATTTGAAGCAACACAGCCACTACAAGGTACCATAAAGCTGAGGGATGTGGTAGCACGTTTCTTTAATGATGCAGTAGTTCCTATTGTAGATGAGTGGGGCAGTTGTACAGGGCTTTTGCACCGCGAAGACTGCAATCAGTTGGATGCTCCACTTTCAACAATGATGAGAAGCCCTCCTCCCAGTGTTTCGGCTTCAACATCTGTTGGTCATCATAAGTCCATTCTTGAATAG	1626	0.4071	MLLNQAFSSFYSKPLHYSYIPLTSCSSSSSPIRRRSVKTSIPRQTNLKILTTRIVQLTRRKQLGQILNEIEVAKKQFGKLNTIVMNAVIEACVRCGDIESAIRIFDEMKNPESCGVDTVTYATILKGLGKAHRFDEAFRLLESVENGTAVGSPKLSAPLVFGLLNALTEAGDLRRANGLLACYGSVLREGEHFSVSVYNLLIKGHINSGCPDTAINMLNEILHQGIMPDRLTYNTLILACVQSEKLDVAMQLFAEMKEKAQKFIHGDLFPDIVTYTTLLKGFGQAKDLVSVVQMVLEMKSRSELYIDRTAYTTMVDALLSCGSVKGALCIFGVIQKQIGCNPELRPKPHLYLSLMRAFAFRGDYDLVKNLHKRILPDTVGTILPVSREEADHLLMEAALNAGQVDVAIKTLTYILSRWKGISWTSHGGMVASRIEALLGFSASLFNPFLLPQVLPSEPIEGFMIPFEATQPLQGTIKLRDVVARFFNDAVVPIVDEWGSCTGLLHREDCNQLDAPLSTMMRSPPPSVSASTSVGHHKSILE	541

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Tsu01g00787	541	ProSiteProfiles	Pentatricopeptide (PPR) repeat profile.	117	147	IPR002885	-
	Tsu01g00787	541	Pfam	PPR repeat family	81	129	IPR002885	-
	Tsu01g00787	541	Pfam	PPR repeat family	195	240	IPR002885	-
	Tsu01g00787	541	ProSiteProfiles	Pentatricopeptide (PPR) repeat profile.	81	111	IPR002885	-
	Tsu01g00787	541	Gene3D	Tetratricopeptide repeat domain	262	437	IPR011990	GO:0005515
	Tsu01g00787	541	Gene3D	Tetratricopeptide repeat domain	159	261	IPR011990	GO:0005515
	Tsu01g00787	541	ProSiteProfiles	Pentatricopeptide (PPR) repeat profile.	229	263	IPR002885	-
	Tsu01g00787	541	Pfam	PPR repeat	310	333	IPR002885	-
	Tsu01g00787	541	Pfam	PPR repeat	273	301	IPR002885	-
	Tsu01g00787	541	ProSiteProfiles	Pentatricopeptide (PPR) repeat profile.	271	301	IPR002885	-
	Tsu01g00787	541	Gene3D	Tetratricopeptide repeat domain	25	151	IPR011990	GO:0005515
	Tsu01g00787	541	MobiDBLite	consensus disorder prediction	517	541	-	-
	Tsu01g00787	541	ProSiteProfiles	Pentatricopeptide (PPR) repeat profile.	194	228	IPR002885	-
	Tsu01g00787	541	PANTHER	OS09G0431600 PROTEIN	23	535	IPR044781	-
	Tsu01g00787	541	TIGRFAM	PPR: pentatricopeptide repeat domain	119	143	IPR002885	-
	Tsu01g00787	541	TIGRFAM	PPR: pentatricopeptide repeat domain	85	109	IPR002885	-
	Tsu01g00787	541	TIGRFAM	PPR: pentatricopeptide repeat domain	273	302	IPR002885	-
	Tsu01g00787	541	TIGRFAM	PPR: pentatricopeptide repeat domain	232	259	IPR002885	-
	Tsu01g00787	541	TIGRFAM	PPR: pentatricopeptide repeat domain	197	229	IPR002885	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Tsu01g00787	Tsu-Chr1	7041014	7046969	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Tsu01g00787	47	399	Miscellaneous Gene Families	AT4G11690	23.497	1.95e-10	61.2

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Tsu01g00787	-		-	mtr:MTR_1g009650	902.894