Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g00709 ATGCGACGCACTCCTCCGACTATCCATTTCCTCGCCGCCACCGACACCGCCTTCTCCACCGCCACAATGTCTTCACGCCCTTACCACCGAGGTCACCGTAGAGGATACTCCGGCCGCTCAAATTCCGGCGGAAGAGGCCATTTCGTTACCGGCGACGATCACTTACAGTCAGTCCGCGATGCAAATTCAGCTCTCCGGCGAGGTGAGAGTGAAAACTTTGCGAATCAAACGCAGTTCCATCAGAATCCACCTTACGATCTGAGTCGTCATCCTCCTCCGGCGTTTTACTTTCAGAATCAACCTTACAATCCTCGTCCTCGTCCACCGCCTCAATATCAGAATCCATCTTATACTCCAAGACCTCATCCTTATCCTCAACCTCATCGACCGCAGCATTTTCGGCAGCCGAATGATCACCGACGTGAATTTCGTCCACAGCAGAATATTCGCCCAAAGGCTCCGGATCATCGAGAGTGGGAGGTTGCTTTGACGCCACCGCCACCTCGTCATAGTGAAAGGTTTAAAGTCCTTTCCTATAATATATTGGCTGACTACCTTGCTATGGACCACTGGAGAAAACTTTATTATCACATACCTTCGTACATGTTGAACTGGCAGTGGAGAaagagtaaaattatttttgagcttGGCTTGTGGTCTGCCGATATCATGTGTTTTCAGGAGGTTGACAGATTTGATGAGTTGGCAGAGGAGTTGAAGTTTAAGGGATACAGAGGAATCTGGAAGATGCGTACGGGCAATCCAGTTGATGGTTGTGCAATCTTTTGGCGAGCATCAAGGTTCAATTTGTTATATGAAGAAAGTATCGAGTTCAATAGGTTTGGACTCAGAGACAATGTTGCTCAAATATGTGTACTAGAGTTCATTAATCAAAATGGATCTCTCCCACCAAGCTTGACAGGTTCTCGTAAGGTTGTAGTTTGCAACACTCATGTGCTTTACAATCCAAATAGAGGGGAAATTAAGCTTGGCCAGGTCAGAATCCTACTGGATAAGGCTCAAGCTGTTTCTCAACTTTGGAATAACTCCCCTGTTATTATCTGCGGGGATTTTAATTGTACCCCAAagAGTCCATTATACAACTTTATCGCAGAACAAAAGTTAGATCTATCTGGAATAGATAGGGATAAACTATCAGGGCAAGCTTCTGCTGTAATTCGCTCCCCGTGGAGATATGGTCCTAAGTCTAGTGAAAAACAATTTGATAATGGTTCAGTTAAGGCCACATCTGCTGAAGGTGACAAGGAAATTActattgaaaaaaatagttCTTTGTCAGACATGCAGAATCCAGACACTGAGAGTAACAGTTCAGAGAATCAAAATGCTCGCCCTGTTTTGGATATGTCTGATAAGACAAATATGCAGTGTGGCAGGGAGAGTGATGCATGTGCAGGAAAAGATACTCAGGAGGCTGGTGACCATAATAAGATTGTTGGTGAAGTTGATGACATGAAAGAAGTGCCAAATCCTTCTTATAATAACGGTAGGCTCCCAATTGATCATATAACGTCGTCACCTCTTGAGACAATTCACACTGACCCAACTGGGATGGGAGGCACAGAACATATATCAGATTCTATCTCGACTTCATATCAAGAATCATTAAGTGAAAAATCCAACTTGCATGACCATAAAGGGAATAAGCATGTGGAGCCTGACTGTTCCCCGACCTCTCTTCAAGAAAGTGATCAAACTTCAAAGGTGAAAATAGATCTTGAGTCAACAGATCTTAACCTAGAAGTATCTTCAAATAAACCATCCAGCATGACTTCAGTTTCTGAAGCTTTTGAAGCCCCTCATTCAGAGTATAGAGAAAACTCATCTTATGATGTCATTGCTAATGACGAAATGAATTGCTCATCAACTGCATATCTAGTTGACGAACCACAAAAACATTCCAATATTGACTTTACACTAAGTGAAAAACTAGAGAAATTTTCCTTTGATGAAATAGATAAAGCCGATGTAAGCAGTGGGAATATTGGTGAAGATGCCAGCGATTTCATAAATGCCTTGCATAATGCCAAAGAAGAAAGCAATGAAGTGGAGGATGACTTATCTCCAAGTCTGATTTCCAAATTTATTGATGCAGAGAAATTTACTTATGATCCATCATTATGGACCCCTGCTGAGATAGAAATTGCAACAGGAAATGCAGAGTGCACGTTCTTGGAGCACCCTTTATCGCTTAAGAGCACATACACTGAAGCTGTGGACTCTTCAGGAACTAGAGACCCCAATGGTGAACCATTGGTAACCAGTTACAACAAGTGCTTCTTGGGCACTGTTGACTACATTTGGCGATCTGAAGGTCTGCAAACAACCAGAGTTCTTGCTCCAATACCTAAACGTGTCATGGAAAGCACTCAAGGATATCCAACAAAGAAATGGGGTAGTGATCATATTGCCTTGGTTTCGGAGTTGGCTTTCTTGGAAGATGGTACTGCAATCAGCAAGGATGTTGTATAG 2493 0.4256 MRRTPPTIHFLAATDTAFSTATMSSRPYHRGHRRGYSGRSNSGGRGHFVTGDDHLQSVRDANSALRRGESENFANQTQFHQNPPYDLSRHPPPAFYFQNQPYNPRPRPPPQYQNPSYTPRPHPYPQPHRPQHFRQPNDHRREFRPQQNIRPKAPDHREWEVALTPPPPRHSERFKVLSYNILADYLAMDHWRKLYYHIPSYMLNWQWRKSKIIFELGLWSADIMCFQEVDRFDELAEELKFKGYRGIWKMRTGNPVDGCAIFWRASRFNLLYEESIEFNRFGLRDNVAQICVLEFINQNGSLPPSLTGSRKVVVCNTHVLYNPNRGEIKLGQVRILLDKAQAVSQLWNNSPVIICGDFNCTPKSPLYNFIAEQKLDLSGIDRDKLSGQASAVIRSPWRYGPKSSEKQFDNGSVKATSAEGDKEITIEKNSSLSDMQNPDTESNSSENQNARPVLDMSDKTNMQCGRESDACAGKDTQEAGDHNKIVGEVDDMKEVPNPSYNNGRLPIDHITSSPLETIHTDPTGMGGTEHISDSISTSYQESLSEKSNLHDHKGNKHVEPDCSPTSLQESDQTSKVKIDLESTDLNLEVSSNKPSSMTSVSEAFEAPHSEYRENSSYDVIANDEMNCSSTAYLVDEPQKHSNIDFTLSEKLEKFSFDEIDKADVSSGNIGEDASDFINALHNAKEESNEVEDDLSPSLISKFIDAEKFTYDPSLWTPAEIEIATGNAECTFLEHPLSLKSTYTEAVDSSGTRDPNGEPLVTSYNKCFLGTVDYIWRSEGLQTTRVLAPIPKRVMESTQGYPTKKWGSDHIALVSELAFLEDGTAISKDVV 830
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g00709 830 Gene3D Endonuclease/exonuclease/phosphatase 146 451 IPR036691 -
Tsu01g00709 830 Gene3D Endonuclease/exonuclease/phosphatase 622 827 IPR036691 -
Tsu01g00709 830 MobiDBLite consensus disorder prediction 429 454 - -
Tsu01g00709 830 MobiDBLite consensus disorder prediction 72 164 - -
Tsu01g00709 830 SUPERFAMILY DNase I-like 166 376 IPR036691 -
Tsu01g00709 830 MobiDBLite consensus disorder prediction 132 163 - -
Tsu01g00709 830 MobiDBLite consensus disorder prediction 588 607 - -
Tsu01g00709 830 Coils Coil 673 693 - -
Tsu01g00709 830 Pfam Endonuclease/Exonuclease/phosphatase family 177 378 IPR005135 GO:0003824
Tsu01g00709 830 PANTHER CARBON CATABOLITE REPRESSOR PROTEIN 4 34 819 - -
Tsu01g00709 830 MobiDBLite consensus disorder prediction 527 544 - -
Tsu01g00709 830 MobiDBLite consensus disorder prediction 396 454 - -
Tsu01g00709 830 MobiDBLite consensus disorder prediction 523 575 - -
Tsu01g00709 830 MobiDBLite consensus disorder prediction 545 559 - -
Tsu01g00709 830 PANTHER CARBON CATABOLITE REPRESSOR PROTEIN 4 HOMOLOG 6 34 819 - -
Tsu01g00709 830 MobiDBLite consensus disorder prediction 22 55 - -
Tsu01g00709 830 MobiDBLite consensus disorder prediction 588 603 - -
Tsu01g00709 830 MobiDBLite consensus disorder prediction 97 130 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g00709 Tsu-Chr1 6221169 6230755 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g00709 205 373 EF-hand Containing Proteins AT5G54130 26.667 9.55e-08 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g00709 - - gmx:100810446 982.245