Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g00700 ATGATAAAATCCATACTAAACAACCTCCAACTTCCACCAAACACCCCAAAAACAAGACTTGCAGAACAAACAATCTTAACCCTTCTTCAATCTCACTGCAACACATTCACAAAACTAACTCAAATCCACGCTCTAATCCTCAAAAATGGCCTCCATAACAACCCATTAGTCCTCACCAAATTCACTTCAACTTCTTCCAACATCAATGCCATTCATTACGCTTCCTCATTCTTATTCCCCTCgtaccaaacacaaaaacaaaccaCCCCATCACCACCATCCTATGATGCATTCCTCTTCAACACACTTATCAGAGCTTTTTCTCAAACCAATGATTCAAAACCAAAGGCATTGGTGTTTTACAAAACAATGCTTTGTTATGGTGTTTTTCCTAATAAGTTTACTTTTCCTTTTGTTCTTAAAGCGTGTGCCGGTATTGGGAATTTGAGGTTAGGGAAATTGATTCATGGGTGTGTTGTGAAGTTTGGTTTTGAAGAGGATGTTCATGTTATGAATACATTGATTCATATGTATTGTTGTTGTGAGGGTGATATTGGGTTTGAGTTTGCTCATAAGGTGTTTGATGATAGTCCTAAGTTGGATACTGTGACTTGGAGTGCTTTGATTGGTGGGTATGTTCGGTTGGGGCGTTCTGCACGTGCTGTTGGATTGTTTAGGGAAATGCAGGTTATGGGTGTTTGCCCTGATGAGATCAcaatggtttcagttttgtcTGCATGTGCTGATTTGGGGGCGCTTGAGCTTGGAAAATGGGTGGAATCATACATTGAGAGGAAAAACATTTCAAAGTCTGTGGAACTCTGCAACGCACTGATAGACATGTTTGCAAAGTGCGGCAATGTCGATAAAGCCATCAAACTGTTCAGACAAATGGAATCACGCACCATAGTTTCATGGACTTCAGTAATTGTTGGTCTTGCAATGCATGGTCGTGGTGTAGACGCTGTTTCTATATTTGATGAAATGGTTGAAAATGGGATAACGCCTGATGATGTTGCTTTCGTTGGGGTACTCTCTGCTTGTAGTCACTCAGGACTTGTTGATAAAGGAAGATACTATTTCAATTCAATGGAGAAGAATTTTAGCATTGTGCCGAAGATAGAACACTATGGATGCATGGTGGATTTGCTTTGTAGAGGTGGATTTGTTAAAGAGGCTTTTGAGTTTGTTCAAAAGATGCCTTttgaaccaaaccaaatcatATGGAGAACAATAATCACCGCTTGTCACGCAACTGGGGAACTCAAGCTTGGAGAGAGTATCTCCAAAGAGCTAATCAAAAGTGTGCCGATGCATGAGTCTAATTATGTTTTGCTGTCGAACATTTACGCAAAATTGCGACGGTGGGAGAAGAAGACTAAGGTAAGGGAGATGATGGATATGAGAGGGATGAAGAAGGTTCCAGGGAGTACCATGATTGAGGTAAACAGTGAAATGTATGAGTTTGTTGCTGGTGATAAGTCTCATGATCAATATAAAGAGATATATGAAATGGTGGATGAGATGGGTAGGGAAATCAAAAGGGCAGGGTATGTGCCTACAACATCGCAAGTGTTGCTTGATATTGATGAAGAAGATAAAGAAGATGCTTTATATAGGCACAGTGAAAAGCTTGCCATAGCTTTTGCTCTTTTGAATACTCCGCCTGGAACTTCCATTAGGATTGTGAAGAACTTGCGCGTTTGTGAAGATTGTCACTCTGCTACTAAGTTTATATCTAAGGTTTATAATCGAGAGATTGTCGTCAGGGACCGCAATCGCTTCCACCATTTCAAGAATGGTTTGTGCTCATGTAGAGACTTTTGGTAA 1830 0.3918 MIKSILNNLQLPPNTPKTRLAEQTILTLLQSHCNTFTKLTQIHALILKNGLHNNPLVLTKFTSTSSNINAIHYASSFLFPSYQTQKQTTPSPPSYDAFLFNTLIRAFSQTNDSKPKALVFYKTMLCYGVFPNKFTFPFVLKACAGIGNLRLGKLIHGCVVKFGFEEDVHVMNTLIHMYCCCEGDIGFEFAHKVFDDSPKLDTVTWSALIGGYVRLGRSARAVGLFREMQVMGVCPDEITMVSVLSACADLGALELGKWVESYIERKNISKSVELCNALIDMFAKCGNVDKAIKLFRQMESRTIVSWTSVIVGLAMHGRGVDAVSIFDEMVENGITPDDVAFVGVLSACSHSGLVDKGRYYFNSMEKNFSIVPKIEHYGCMVDLLCRGGFVKEAFEFVQKMPFEPNQIIWRTIITACHATGELKLGESISKELIKSVPMHESNYVLLSNIYAKLRRWEKKTKVREMMDMRGMKKVPGSTMIEVNSEMYEFVAGDKSHDQYKEIYEMVDEMGREIKRAGYVPTTSQVLLDIDEEDKEDALYRHSEKLAIAFALLNTPPGTSIRIVKNLRVCEDCHSATKFISKVYNREIVVRDRNRFHHFKNGLCSCRDFW 609
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g00700 609 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 201 235 IPR002885 -
Tsu01g00700 609 Pfam E motif 423 481 IPR046848 -
Tsu01g00700 609 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 271 301 IPR002885 -
Tsu01g00700 609 Gene3D Tetratricopeptide repeat domain 370 547 IPR011990 GO:0005515
Tsu01g00700 609 Gene3D Tetratricopeptide repeat domain 255 369 IPR011990 GO:0005515
Tsu01g00700 609 Pfam PPR repeat family 302 349 IPR002885 -
Tsu01g00700 609 Pfam PPR repeat family 201 248 IPR002885 -
Tsu01g00700 609 Pfam DYW family of nucleic acid deaminases 517 609 IPR032867 GO:0008270
Tsu01g00700 609 Gene3D Tetratricopeptide repeat domain 90 152 IPR011990 GO:0005515
Tsu01g00700 609 Gene3D Tetratricopeptide repeat domain 153 254 IPR011990 GO:0005515
Tsu01g00700 609 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 25 595 - -
Tsu01g00700 609 PANTHER - 25 595 - -
Tsu01g00700 609 Pfam E+ motif 487 513 IPR046849 -
Tsu01g00700 609 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 302 336 IPR002885 -
Tsu01g00700 609 TIGRFAM PPR: pentatricopeptide repeat domain 304 337 IPR002885 -
Tsu01g00700 609 TIGRFAM PPR: pentatricopeptide repeat domain 203 237 IPR002885 -
Tsu01g00700 609 TIGRFAM PPR: pentatricopeptide repeat domain 274 301 IPR002885 -
Tsu01g00700 609 TIGRFAM PPR: pentatricopeptide repeat domain 341 372 IPR002885 -
Tsu01g00700 609 Pfam PPR repeat 275 301 IPR002885 -
Tsu01g00700 609 Pfam PPR repeat 376 400 IPR002885 -
Tsu01g00700 609 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 96 131 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g00700 Tsu-Chr1 6141113 6143533 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g00700 100 609 Glycoside Hydrolase AT3G49170 39.029 2.94e-130 401
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g00700 - - lang:109350726 989.564