Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g00672 ATGTCTAAAGAAGAACTCATGTTCTTAGTGTTACAACATTTTCAGGAGGAAGGTTTGATGGAAACAGCACAAACGTTTGGGCGTGAAACTGGCTTGTTCTTCGACTGTAAGTATTTTGAGGATATGGTACTTAATGGCAAGTGGGATGAGGTTGAGAAATATCTTTCTGGATTCATGAATGTTGAAGATGATAAGTACTCAATCAAAATATACTttgaattaagaaaacaaaaatacctTGAGGCATTGGACAGCAATGATGGTGGCAAGGCTTTAGATATCCTCAGGAAGGATCTGAAAGTCTTCAGCTCAAAGGATGAAAACCTATATAAAGAAATGACTCAACTTTTGACAATTAACAATATAAGGGAACATGGATCACTTTCAGCATATCAAGATGCAATTTCTGCAAGAAAGAAGGTGATGGATGATATTAGAGAAATCATAGAGAAACATCCTATGCTACATGGAAAATTGAAATTTCCTCCCATTCAAAGTCAGAGTCTAAAGCATCTTCTAACTGAAAGATTAAATTGGCAGCATCAAAATAATGTTCCAGCTGCTGCTCCAGAACAGGGCATCTTTATGAATCATGTTCATGTCCATCCTTGCAGACCATCTAATTTTGCTTCAATAAATCATGGAACGGATATGAATAATGTTGGGATTCCTAATGAGGTAGTTATCTGCTCAAAAACTTTGGAGGACATGAAACCTGATTTAATTGAAAAATCCCTCAAAGTATCAAAGGGTATAGTTCATATTTCTACACCATCTCAATGTCAAATGTTGCTACTCCCTAAACATTCAGAAGCAAACAAGATTGTTAAACTCGCTTACACATTTGCGGGAAATGGCATTATAGCATTGACATCAAAGGGTGCTCATCCACTTTGGGTATGGCCACATGCTGCCAATGACTTGGATTCCAAGGCAACAACACAAGTTTGTCCTCAATTATGGCATCCAAAAAGTAACTTGGAATTTATGAGGAATGACCTTAAACAATCTAATGGTGAAGATTCAGTTTCATGTTTTGCTATATCAAAAAGGGATGCATATCTCATATCAACTTCAGGAGGGATGACTAATTTGTTCAATATGGGGACATTTAAGGTTCTAACAACTATCTTACAACCTCCACCAATGGTAACATATCTTGCCTTCTATCCTGAAGATAATAATCAAATAGTTGTTGGCTTTGATGACTCCAGCATAACTATAATCAATGTTCATGATAATGATCAGGCTCAAATCAAGCTTGAGGGTCATTCTAAAAGAGTTACTTCTTTTGCCTTCTCAAATACTTTGAATGTTCTTGTTTCTGCTGATGCAAGTGCTCAGATTATTGTATGGAATAGTAGAAACTGGGAAAAATTAAGAGATAGAAATTTGCAAATGAATGGAACAAATGTGACACAAATATTATCTGAAACTCAAATTCAATTTCACCCAGATCAAAAAAAGTTTCTTGTTGCACATAATATTCTTCTTGGAATTTATGAAGCAACAGAACTAAAATGTGTCAACCAGTGGGATCCAAAATTTTCAACAGTAATCAACCAAGCAACATTTTCATCTAATGGTCAAATGGTGTATGCTAGTTTTGGTGATGGAAGTTTGGCAATATTTGATGCATCAAATTTTCGAATGCATTATATGATTCATCCCTCTATTTACCTTTCAATTTCaagTTTGAAAATCTACCCAACTGCTATAGCTGCACATCCTCAGAAACCAAACCAATTTGCTGCAGGATTCACAGATGGTAGTGTTTGTGTCTTTGAGCCAAAGGAGCCAAATGGTAATTGGATTATGCCTTAA 1824 0.3531 MSKEELMFLVLQHFQEEGLMETAQTFGRETGLFFDCKYFEDMVLNGKWDEVEKYLSGFMNVEDDKYSIKIYFELRKQKYLEALDSNDGGKALDILRKDLKVFSSKDENLYKEMTQLLTINNIREHGSLSAYQDAISARKKVMDDIREIIEKHPMLHGKLKFPPIQSQSLKHLLTERLNWQHQNNVPAAAPEQGIFMNHVHVHPCRPSNFASINHGTDMNNVGIPNEVVICSKTLEDMKPDLIEKSLKVSKGIVHISTPSQCQMLLLPKHSEANKIVKLAYTFAGNGIIALTSKGAHPLWVWPHAANDLDSKATTQVCPQLWHPKSNLEFMRNDLKQSNGEDSVSCFAISKRDAYLISTSGGMTNLFNMGTFKVLTTILQPPPMVTYLAFYPEDNNQIVVGFDDSSITIINVHDNDQAQIKLEGHSKRVTSFAFSNTLNVLVSADASAQIIVWNSRNWEKLRDRNLQMNGTNVTQILSETQIQFHPDQKKFLVAHNILLGIYEATELKCVNQWDPKFSTVINQATFSSNGQMVYASFGDGSLAIFDASNFRMHYMIHPSIYLSISSLKIYPTAIAAHPQKPNQFAAGFTDGSVCVFEPKEPNGNWIMP 607
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g00672 607 Pfam WD domain, G-beta repeat 418 453 IPR001680 GO:0005515
Tsu01g00672 607 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 421 453 - -
Tsu01g00672 607 Gene3D - 315 478 IPR015943 GO:0005515
Tsu01g00672 607 SMART WD40_4 370 410 IPR001680 GO:0005515
Tsu01g00672 607 SMART WD40_4 505 545 IPR001680 GO:0005515
Tsu01g00672 607 SMART WD40_4 330 367 IPR001680 GO:0005515
Tsu01g00672 607 SMART WD40_4 414 453 IPR001680 GO:0005515
Tsu01g00672 607 SMART WD40_4 562 596 IPR001680 GO:0005515
Tsu01g00672 607 SMART Lish 2 34 IPR006594 GO:0005515
Tsu01g00672 607 PANTHER TOPLESS-RELATED PROTEIN 1-RELATED 3 605 IPR027728 GO:0006355
Tsu01g00672 607 ProSiteProfiles Trp-Asp (WD) repeats profile. 421 462 IPR001680 GO:0005515
Tsu01g00672 607 PANTHER TOPLESS-LIKE PROTEIN 3 605 - -
Tsu01g00672 607 SMART ctlh 32 90 IPR006595 -
Tsu01g00672 607 ProSiteProfiles C-terminal to LisH (CTLH) motif profile. 33 90 IPR006595 -
Tsu01g00672 607 ProSiteProfiles LIS1 homology (LisH) motif profile. 2 34 IPR006594 GO:0005515
Tsu01g00672 607 Gene3D - 479 603 IPR015943 GO:0005515
Tsu01g00672 607 SUPERFAMILY WD40 repeat-like 335 598 IPR036322 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g00672 Tsu-Chr1 5942927 5949465 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g00672 - - mtr:MTR_1g012820 801.971