Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g00656 ATGGCCgtccaaaaaattataatcacacCAATTTTGGTTTTTCTAATGACCCTTTTCTTCAAtgcatcatcttcatcttctaataATTCACAATATCCATTTTTAAACCATGGTGTTAGATCAGCATATTGGCCTGCAGGTGGTGATTTTTTACCTTCTTCAATTAACACAAAGTACTTCACTCACATTTTATATGCCTTCATTCAACCCGACCCAATTTCATTCAACCTTATAATCACCAAATCCGACGAAAAATGGGCCCATAAATTCACCAATGAGCTCAGCCACCATTACCCGCCGGTGAAAACACTTTTATCCATTGGAGGAGGTAGTAGTAATTCAACACTCTTCTCTGAAATCGCTAGCACAAAACTAAACAGAGAGATTTTCATAAATTCGACAATTCACATGGCACGAAAATATGGATTTGACGGTGTTGACTTGGATTGGGAATttcctcaaaataaaaaagacatgTTTAACCTTGGATTGTTATATGAAGAATGGTATAACGCTTTGTTCGCCGAAGCTATAGTTCAAAGAAAACCACGTTTGCTTTTGACTTCTGCAGTTTATTATAATTCTACGGTACGATTTATTGGTAATGAAGGACCGAGATCTTATCCGGCCCAAGCTATCAATAAATACTTGGATTGGGCCAGTCCAATGTGTTTCGATTATCACGGCTCGTGGGCTAATAATACGGGCTATAATGCTGCTTTATATGACGCGAATTCCGAAATTAGTACAAATTTTGGAATTAGGTCATGGATCAAATCGGGTGTACGACCTGAAAAGTTGGTTATGGGGTTGGCTTTATACGGGAGGACGTGGGAGCTGAAGGATCCAAATGTTCACGGGGTAGGAGCCGATGCGGTGGGACCCGCAACCGACACGGATGGTAGTATGAATTATAATGAAATCTTGAAGTTTAATAAAGAGAATGGTGCTAATGTTGTGTATGATAAGGTTGCTGTGTCTTTTTATTCTTATGCGGGTACTACTTGGATTGGGTATGATGATGTGCCATCTATAACCACTAAGGTTAGGTTTGCTAAGTCTTTGGGTTTAAAGGGCTATTTCTTTTGGGCTCTTGGGAAGGACAAGGATTGGACCATTTCAAGACAAGctTCAAATGTATGGGGACACTGA 1152 0.3767 MAVQKIIITPILVFLMTLFFNASSSSSNNSQYPFLNHGVRSAYWPAGGDFLPSSINTKYFTHILYAFIQPDPISFNLIITKSDEKWAHKFTNELSHHYPPVKTLLSIGGGSSNSTLFSEIASTKLNREIFINSTIHMARKYGFDGVDLDWEFPQNKKDMFNLGLLYEEWYNALFAEAIVQRKPRLLLTSAVYYNSTVRFIGNEGPRSYPAQAINKYLDWASPMCFDYHGSWANNTGYNAALYDANSEISTNFGIRSWIKSGVRPEKLVMGLALYGRTWELKDPNVHGVGADAVGPATDTDGSMNYNEILKFNKENGANVVYDKVAVSFYSYAGTTWIGYDDVPSITTKVRFAKSLGLKGYFFWALGKDKDWTISRQASNVWGH 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g00656 383 Gene3D Glycosidases 53 369 - -
Tsu01g00656 383 ProSitePatterns Glycosyl hydrolases family 18 (GH18) active site signature. 143 151 IPR001579 GO:0004553|GO:0005975
Tsu01g00656 383 CDD GH18_plant_chitinase_class_V 39 374 - -
Tsu01g00656 383 Gene3D - 273 339 IPR029070 -
Tsu01g00656 383 ProSiteProfiles Glycosyl hydrolases family 18 (GH18) domain profile. 38 383 IPR001223 GO:0005975
Tsu01g00656 383 Pfam Glycosyl hydrolases family 18 43 368 IPR001223 GO:0005975
Tsu01g00656 383 SUPERFAMILY (Trans)glycosidases 42 370 IPR017853 -
Tsu01g00656 383 SMART 2g34 38 368 IPR011583 GO:0008061
Tsu01g00656 383 SUPERFAMILY Chitinase insertion domain 274 339 IPR029070 -
Tsu01g00656 383 PANTHER CHITINASE 20 382 - -
Tsu01g00656 383 PANTHER CLASS V CHITINASE CHIT5A 20 382 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g00656 Tsu-Chr1 5784772 5787507 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g00656 39 381 Glycoside Hydrolase AT4G19810 41.739 3.85e-89 272
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g00656 K01183 - gmx:100787511 542.347