Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g00645 ATGTTTCAAAGAAACCCTTTATACACAAACCCAGAACCATGTCAGCATCTTTCTGATTACAAACACAAACATGGTTTCAGTGGCTACAAAGCTATTCAAAAGCTACTTGTAACTTCTCCAATTggaaaaattagtttaaaaaaacCTAATTTAAGAATACCCAGATGCAGTTTTTGTAATGGGTGtgaaaaaaaaagggtttttttatgtttaatttgttcttcattttcttgtTTGGATCATACCCTTTTGCATCCAAAAGCTGAAATTGGTCATACTCTGTTTATTGATATAGAAAGAGCTGAACTTTTTTGTGGGTTGTGTTGTGATCAAATTTATGACCCTGATTTTGATCAAGTTGTTATGGCTAAACATTCAATGGTTTTGCCACAAGGTAGTGCTATTGGAAATGAGAGTATTGGTCAGAGATTGATTAAGAGAAGGAGATTGGTTTCTGGGGTTGGATTGTATTTGAATAGTAAATCTAAGTTTAGTTTTCCAATTAAAGATCTAAGGGGTAAAACTTGTTTTCCTGAGGGATTAAGGGGTTTGAATAATTTGGGTAGTACTTGTTTTATGAATTCTGTGTTGCAAGCATTGTTACATGCACCTCCTTTCAGGGACTATTTCTTGAGTGGTGGACATAGTTTGGAAGATTGTAAGAGAAGAACGATGAATCGGttgtgtttgatttgtgatATCAATGCTGTTTTTTCTGCTATGTATTCGGGTGATCGAAATCCGTATAGTCCTGCTCAATTTCTCTACAGCTGGTGGCAGCATTCGGCAAATTTAGCGAGTTACGAGCAGCAGGATGCTCATGAATTTTTCATTTCGATGTTAAATACAATCCATGAGAAAGAGGGCATAACGAGGAATGGAAGCAAAGGAAATGGTGGAGATTGTCAATGCATTGCTCACAGAGTGTTTTATGGACTTCTGAGATCAGATGTTACATGTATGGCCTGTGGATTCATCTCAACAACCTATGACCCTTTCTTGGACATTTCACTTAACTTAGACATTAATAACTCTTTGAGAGAAAAGGGTAAAAAAGTTACCAAATCAAATGAGGATGATAGCATGTCTACACTTCTCGGTTGTTTGGATTTGTTCACTCGGCCGGAGAAGTTAGGTTCGGACCAGAAACTTTACTGCCAAAAATGTCAGGAAAGGCAAAACTCATTGAAACAAATGTCAATTACAAAGCTCCCTCCGGTACTTACTTTGCACGTAAAACGATTTGAGCATTCTTTTGTTAAGAAGTTGTCAAGAAAGATCGACCGATACCTACAATTTCCATTCTCCTTGGACATGACTCCATATTTGTCCTCTTCTATCCTTAGAGCCAGATATGGaaatagaatttttaattttggaggCAATGAATCTGATGCATTTTCCAAGTTCGAGATTTTTGCAGTGGTGACACATTCAGGGACACTCGAGTCTGGCCATTATGTTTCTTTTGTACGATTAAGGAAGCAATGGTACAGATGCGACGATGCTTGGATCACCGAAGTTGACGAGGCAACAGTTAGAGCTTCGCAATGTTACATGATCTTTTATGCGCAGAAAACTTTGTTCAATAACGCAAGTGAAGATCTGAGTCACCTTCCAAATTCACCTGGAAGAGAGGTTTTCATTCCTATTGCTGGTTGTTGCTAG 1668 0.3615 MFQRNPLYTNPEPCQHLSDYKHKHGFSGYKAIQKLLVTSPIGKISLKKPNLRIPRCSFCNGCEKKRVFLCLICSSFSCLDHTLLHPKAEIGHTLFIDIERAELFCGLCCDQIYDPDFDQVVMAKHSMVLPQGSAIGNESIGQRLIKRRRLVSGVGLYLNSKSKFSFPIKDLRGKTCFPEGLRGLNNLGSTCFMNSVLQALLHAPPFRDYFLSGGHSLEDCKRRTMNRLCLICDINAVFSAMYSGDRNPYSPAQFLYSWWQHSANLASYEQQDAHEFFISMLNTIHEKEGITRNGSKGNGGDCQCIAHRVFYGLLRSDVTCMACGFISTTYDPFLDISLNLDINNSLREKGKKVTKSNEDDSMSTLLGCLDLFTRPEKLGSDQKLYCQKCQERQNSLKQMSITKLPPVLTLHVKRFEHSFVKKLSRKIDRYLQFPFSLDMTPYLSSSILRARYGNRIFNFGGNESDAFSKFEIFAVVTHSGTLESGHYVSFVRLRKQWYRCDDAWITEVDEATVRASQCYMIFYAQKTLFNNASEDLSHLPNSPGREVFIPIAGCC 555
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g00645 555 ProSiteProfiles Zinc finger UBP-type profile. 36 131 IPR001607 GO:0008270
Tsu01g00645 555 SUPERFAMILY RING/U-box 13 119 - -
Tsu01g00645 555 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 5 551 - -
Tsu01g00645 555 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 182 526 IPR028889 -
Tsu01g00645 555 Gene3D Cysteine proteinases 176 530 - -
Tsu01g00645 555 PANTHER UBIQUITIN C-TERMINAL HYDROLASE 22 5 551 - -
Tsu01g00645 555 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 8 129 IPR013083 -
Tsu01g00645 555 Pfam Ubiquitin carboxyl-terminal hydrolase 183 523 IPR001394 GO:0004843|GO:0016579
Tsu01g00645 555 SUPERFAMILY Cysteine proteinases 179 524 IPR038765 -
Tsu01g00645 555 Pfam Zn-finger in ubiquitin-hydrolases and other protein 56 116 IPR001607 GO:0008270
Tsu01g00645 555 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 183 198 IPR018200 GO:0004843|GO:0006511
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g00645 Tsu-Chr1 5624923 5628076 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g00645 183 525 Miscellaneous Gene Families AT2G24640 30.769 1.19e-37 144
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g00645 K11366 - gmx:100806347 921.768