Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g00580 ATGGATTTCAGATTGATGGGTTTGGATTCTCATCCAGTTCTTCATGCTCTCATGGATCTTTCAGACGATACTTCTTCCGACAAGGCATCGCACAATGCTCCGACACGGTGTTACGTGAGAGACGCGAAGGCAATGGCTGCTACTCCAGCGGACGTGAAGGAACATCCGAATTCATACGTGTTTGTGATCGATATGCCCGGGTTGAAATCTGGTGATATAAAGGTTCAGGTTGAAGATGACAATGTGCTTGTGATAAGTGGTGAAAGGAAGAGGGAAGGAGAGAAAGAAGTTGTCAAGTATTTGAGAATGGAGCGAAGGGTTGGGAAGTTTATGAGGAAATTTGTTCTTCCTGAGAATGCCAATACTGATGCTGTTTCTGCTGTGTGTCAAGATGGGGTTCTCACTGTTTCTGTTAACAAATTGCCTCCTCCTCAGCCTAAGAAGCCTAGAACCATTGAGGTTAAGATTGCTTGA 474 0.4473 MDFRLMGLDSHPVLHALMDLSDDTSSDKASHNAPTRCYVRDAKAMAATPADVKEHPNSYVFVIDMPGLKSGDIKVQVEDDNVLVISGERKREGEKEVVKYLRMERRVGKFMRKFVLPENANTDAVSAVCQDGVLTVSVNKLPPPQPKKPRTIEVKIA 157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g00580 157 SUPERFAMILY HSP20-like chaperones 24 149 IPR008978 -
Tsu01g00580 157 Pfam Hsp20/alpha crystallin family 51 155 IPR002068 -
Tsu01g00580 157 PANTHER HEAT-SHOCK PROTEIN 20 FAMILY MEMBER 10 157 - -
Tsu01g00580 157 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 41 155 IPR002068 -
Tsu01g00580 157 Gene3D - 10 156 IPR008978 -
Tsu01g00580 157 PANTHER 17.6 KDA CLASS II HEAT SHOCK PROTEIN-RELATED 10 157 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g00580 Tsu-Chr1 5114701 5115174 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g00580 K13993 - jre:108984742 243.432