Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g00579 atGGATTTGAGATTGATGGGTTTGGATGCTCCTGTTCTTCATGCTCTCCATCAAATGATGGACCTTTCAGATGACACTTCTTCCGACAAGGCATCGTTCAATGCTCCCACACGGTGCTATGTCAGAGACGCGAAGGCAATGGCTTCTACTCCGGCGGACGTGAAGGAACATCCGAATTCATACGTGTTTGTGATCGATATGCCGGGGTTGAAATCTGGTGACATAAAGGTTCAGGTTGAAGATGACAATGTGCTTGTGATAAGTGGAGAGAGGAAGAgggaagaagagaaagaaggtGTTAAGTATTTGAGAATGGAGCGAAGGGTTGGGAAGTTTATGAGGAAATTTGTTCTTCCTGAGAATGCTAATATTGATGCTGTTTCTGCTGTGTGTCAAGATGGGGTTCTCACTGTTTCTGTTGAGAAGTTGCCTCCTCCTCAGCCTAAGAAGCCTAGAACTATTGAGGTTAAGATTGCTTGA 480 0.4292 MDLRLMGLDAPVLHALHQMMDLSDDTSSDKASFNAPTRCYVRDAKAMASTPADVKEHPNSYVFVIDMPGLKSGDIKVQVEDDNVLVISGERKREEEKEGVKYLRMERRVGKFMRKFVLPENANIDAVSAVCQDGVLTVSVEKLPPPQPKKPRTIEVKIA 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g00579 159 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 43 157 IPR002068 -
Tsu01g00579 159 Pfam Hsp20/alpha crystallin family 53 157 IPR002068 -
Tsu01g00579 159 PANTHER HEAT-SHOCK PROTEIN 20 FAMILY MEMBER 10 158 - -
Tsu01g00579 159 PANTHER 17.1 KDA CLASS II HEAT SHOCK PROTEIN-LIKE 10 158 - -
Tsu01g00579 159 SUPERFAMILY HSP20-like chaperones 17 151 IPR008978 -
Tsu01g00579 159 Gene3D - 11 158 IPR008978 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g00579 Tsu-Chr1 5109460 5109980 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g00579 K13993 - jre:108984742 263.077
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g00579 01 5109460 5109980 Tsu01g00579 01 5109460 5109980 ECH