Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g00570 ATGATAGCTTACCTTGAACACTTCGTTCACGGAAACGACACAGAATCAACTCCAAACGACGACGTTTCTTCCCTCCAAGGTTCTTTCCATTTCTCTCCAATTTCCATCGCAACCAAAGACTTCGGCGGCATGAAATCCTCCACTCCCCTCGCCGTAATCCGCCCTTACTCCACCTCCGACGTCGCAAGAGCAGTCaaagcagcaacaacaaccacaaactTAACCGTCGCGCCACGTGGCAACGGTCACTCAATTAACGGCCAAGCCATGGCGGAAAAAGGACTAGTTCTCGACATGCGCGCCACCGCGGAAGAACATTTTCAACTTCTTTATCACGACGGTGTTCCATACGTCGACGTTTCTGGAGGGGCATTATGGGAAGAAGTGTTGAAACGCTGCGTTTCACAGTTTCAACTTGTTCCGAGATCGTGGACTGATTATCTCGGGTTAACGGTCGGTGGAACGTTATCTAACGCCGGTGTTAGTGGTCAGACTTTCCGTTACGGTCCTCAAACCGCAAACGTAACGGAATTAGAAGTCGTTACTGGTAAAGGTGATACTTTGGtttgtaatgaaaatgaaaattcagAACTTTTTTTTGCAACGCTTGGTGGTCTTGGTCAATTTGGTATCATCACTAGAGCCAGAATCGTTCTTCAACAAGCCCCTGATATGGTGAGGTGGATAAGGGTGATTTACTCTGAATTTGAGGATTTTACCAAAGATGCAGAGTGGCTGGTGACACTACCAGAAGGTGACGGTTTTGATTACGTGGAAGGATTCGTTGTGGCTAACAATGATGACTCTTGCAATGGATGGCCCACAGTTCCAATGGGTTCGAACCAAGTATTCGACCCGGTTCTTGTTCCTTCTTCGGCTGGACCGGTTCTCTATTGCTTAGAACTTGCCCTTCACTATCGAAAAACCGCTCGTTCTTCGGATGTTAACAAGAAAGTGGATAGATTGCTTGGAGGGTTGAGATTTGTTGAGGGTATAAAATTTGAGGATGATGTGAAATACATGGATTTTTTGCTACGTGTAAAGAGTGTGGAAGAGGATGCTAAAGCCAAAGGCATATGGGATGCACCTCACCCATGGCTCAACATGTTTGTGTCCAAGTCCGACATAGCTGATTTTGATCGTGAAGTGTTCAAGAAAATCCTCAAACATGGTGTTGGTGGTCCCATTCTAGTTTATCCACTATTGCGAAGCAAGTGGGATGATAGACACTCGGTAGTGGTGCCAGACAGCAACATTTTCTACATAATAGCATTACTACGATTTATTCCACCACCACCAAAGGGACCACCTACTGATAAATTGGTGTCACAAAACAATGCAATTATTCAATTGTGCTACAACAGAGGATTTAATTTCAAGTTATATCTTCCTCACTACTTGTCACAGGAGAATTGGATGAGACACTTTGGTGATAAGTGGACTAGATTTGTCCagagaaaacaaaattttgatccAATGGCTATTCTTGCACCTGGACAGAAAATATTTTCAAGAAACCaacttaaataa 1530 0.4268 MIAYLEHFVHGNDTESTPNDDVSSLQGSFHFSPISIATKDFGGMKSSTPLAVIRPYSTSDVARAVKAATTTTNLTVAPRGNGHSINGQAMAEKGLVLDMRATAEEHFQLLYHDGVPYVDVSGGALWEEVLKRCVSQFQLVPRSWTDYLGLTVGGTLSNAGVSGQTFRYGPQTANVTELEVVTGKGDTLVCNENENSELFFATLGGLGQFGIITRARIVLQQAPDMVRWIRVIYSEFEDFTKDAEWLVTLPEGDGFDYVEGFVVANNDDSCNGWPTVPMGSNQVFDPVLVPSSAGPVLYCLELALHYRKTARSSDVNKKVDRLLGGLRFVEGIKFEDDVKYMDFLLRVKSVEEDAKAKGIWDAPHPWLNMFVSKSDIADFDREVFKKILKHGVGGPILVYPLLRSKWDDRHSVVVPDSNIFYIIALLRFIPPPPKGPPTDKLVSQNNAIIQLCYNRGFNFKLYLPHYLSQENWMRHFGDKWTRFVQRKQNFDPMAILAPGQKIFSRNQLK 509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g00570 509 PANTHER CYTOKININ DEHYDROGENASE 7 31 507 - -
Tsu01g00570 509 Pfam Cytokinin dehydrogenase 1, FAD and cytokinin binding 223 503 IPR015345 GO:0009690|GO:0019139|GO:0050660
Tsu01g00570 509 ProSiteProfiles PCMH-type FAD-binding domain profile. 45 222 IPR016166 GO:0071949
Tsu01g00570 509 SUPERFAMILY FAD-binding/transporter-associated domain-like 35 219 IPR036318 GO:0050660
Tsu01g00570 509 Pfam FAD binding domain 49 190 IPR006094 GO:0050660
Tsu01g00570 509 PANTHER GULONOLACTONE OXIDASE 31 507 - -
Tsu01g00570 509 SUPERFAMILY FAD-linked oxidases, C-terminal domain 223 503 IPR016164 GO:0003824|GO:0050660
Tsu01g00570 509 Gene3D - 37 504 IPR016167 -
Tsu01g00570 509 Gene3D - 226 462 IPR016170 -
Tsu01g00570 509 Gene3D - 99 224 IPR016169 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g00570 Tsu-Chr1 5034277 5040799 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g00570 K00279 - gmx:100783374 842.802