Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g00548 ATGGAGGAAGGACAGCCCAGAAGCAGAAATTTCAAGAGGGTATGTGTCTTCTGCGGCAGCAACTCCGGCAACCGTCAAATTTTCAGTGACGCCGCCATTCAATTGGCTGATGAACTGGTTAAGAGGAACATAGATTTGGTGTATGGTGGAGGAAGTGTAGGACTGATGGGTTTAATATCTCAGAAAATGTATAATGGTGGCTGCCATGTTCTCGGGGTTATTCCAAAAGCTCTCATGCCTCATGAGATATCTGGTGAAGCAGTAGGTGAAGTAAAGATTGTTTCGGATATGCATGAGAGAAAAGCTGCAATGGCTCGAGAAGCTGATGCATTTATTGCACTTCCTGGAGGATATGGAACTATGGAAGAGCTTCTGGAGATGATAACTTGGGCTCAACTTGGAATTCATAAAAAACCGGTTGGCCTACTGAATGTTGATGGTTACTATAACTCTTTGCTTGCATTATTTGACAATGGTGTTGAAGAAGGCTTCATTAAGCCCAGTGCTCGGAGTATAGTTGTCTCAGCTTCATCAGCCAAAGAACTTATGATGGAGATGGAGAGTTACTCTCCTTCCCATGAGCATGTAGCCCCTCATGAGAGCTGGCAGATGAAGCAATTAAGTAATTATCCAGGACAAGAAAAGGCAGAATGA 654 0.4373 MEEGQPRSRNFKRVCVFCGSNSGNRQIFSDAAIQLADELVKRNIDLVYGGGSVGLMGLISQKMYNGGCHVLGVIPKALMPHEISGEAVGEVKIVSDMHERKAAMAREADAFIALPGGYGTMEELLEMITWAQLGIHKKPVGLLNVDGYYNSLLALFDNGVEEGFIKPSARSIVVSASSAKELMMEMESYSPSHEHVAPHESWQMKQLSNYPGQEKAE 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g00548 217 MobiDBLite consensus disorder prediction 194 217 - -
Tsu01g00548 217 Pfam Possible lysine decarboxylase 56 186 IPR031100 -
Tsu01g00548 217 PANTHER LOG FAMILY PROTEIN YJL055W 10 207 - -
Tsu01g00548 217 TIGRFAM TIGR00730: TIGR00730 family protein 12 189 IPR005269 GO:0009691|GO:0016787
Tsu01g00548 217 SUPERFAMILY MCP/YpsA-like 10 189 - -
Tsu01g00548 217 Gene3D - 10 205 - -
Tsu01g00548 217 PANTHER CYTOKININ RIBOSIDE 5'-MONOPHOSPHATE PHOSPHORIBOHYDROLASE 10 207 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g00548 Tsu-Chr1 4789585 4792482 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g00548 K22522 - gmx:100785484 376.711