Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g00544 ATGAACGATCCAAATGCCCCTATGTACTACAAAGGTGTTTACCACCTTTTCTATCAACATAATCCTTATGCAGCAACATTTGGTGATATAATCATATGGGCTCATTCTGTATCCTATGATCTCATCAATTGGATTCATCTGAATAATGCTCTTGAACCAAGTGAGCCTTATGACATCAACAGTTGTTGGTCAGGTTCAGCCACTATACTCCCAGGTGAAAAACCTGCTATTTTGTACACAGGAATTGATCACAATAAACACCAAGTTCAAAACTTAGCTATACCGAAGAATCTATCAGACCCTTTCTTAAGAGAGTGGCAAAAACACCCTCAAAATCCTTTGATGAATCCACCTAGTGAAGTTGAAGTGGATAATTTCAGAGACCCTTCAACTGCATGGCATGGAAAAGATGGAAAATGGAGAGTAATAATCGGTGCTCAAAATGGCGATGAAGGGAAAACTATACTTTACCAAAGTGAGGATTTTGTTAATTGGAAGGTGAATCCGAATCCGTTTTTCGCAACAGAAAATACTGGAGTTTGTGAATGTCCAGATTTTTTTCCTGTGTATATCAATAGCACAAATGGAGTTGATACATCTGTGGAAAATTCAAGTGTTAGACATGTTTTGAAGATAAGTTATCTAACTAAACAACATGACTACTATTTTCTTGGTAGATATGTTTCTGATCAGGAAAAGTTTAATCCTGATGTAACATTTACAGGAACTAGTAAAGATTTAAGGTATGATTATGGTAAATTTTATGCTTCAAAGTCATTTTTTGACTATGCTAAGAATAGGAGAATATTGTGGGGTTGGGTGAATGAGTCTGACAGTACACAAGATGATATTCAGAAAGGATGGGCAGGTTTacagACAATTCCAAGGCAAGTTTGGCTTGATAAAAGTGGGAAGAGATTAATACAGTGGCCAATTGAAGAAGTAGAAAATTTAAGAGACAAAAAAATCAGTATTACAGGAAAGAAACTTGAGGGTGGATCAACTCTTGAAATCTCAGGCATTACTGCATCACAGGTTGATGTAGAAGTGTTGTTTCATCTACCTGAACTAGAAAACGGCGAGTGGTTAGACGATCCAAGTGAAGTTGATCCTCAACTACTATGTAGCAAACAATATGAATCAAGAAGTGGTAAAATAGGGCCATTTGGTTTGTTAGCTTTAGCTTCTAAGGATCTCACAGAACAAACTGCAGtgtttttccaaatatatagaaCTTCCGATAGATATGTATGTCTAATGTGCAGTGACCAAAGCAGGTCTTCGTTGCGACATGACCTTGATAAAACAACATATGGAACTATCTTTGACATAGATTCCAATCTCAAAACGATTTCACTAAGAACCTTGATTGACAAGTCCATTATTGAGAGTTTTGGAGATGGAGGGAAAGCTTGCATAACAAGTAGAGTTTATCCCTTATTGGCTATAGAGAAAGATGCACATCTTTATATATTCAACAATGGAAGCCAAAGTGTGGTAATCTCACAACTTAATGCTTGGAGCATGAAGCAAGCAGAGATTGGTCATGAGAGAAATATAAATTGTGCCTAA 1572 0.3626 MNDPNAPMYYKGVYHLFYQHNPYAATFGDIIIWAHSVSYDLINWIHLNNALEPSEPYDINSCWSGSATILPGEKPAILYTGIDHNKHQVQNLAIPKNLSDPFLREWQKHPQNPLMNPPSEVEVDNFRDPSTAWHGKDGKWRVIIGAQNGDEGKTILYQSEDFVNWKVNPNPFFATENTGVCECPDFFPVYINSTNGVDTSVENSSVRHVLKISYLTKQHDYYFLGRYVSDQEKFNPDVTFTGTSKDLRYDYGKFYASKSFFDYAKNRRILWGWVNESDSTQDDIQKGWAGLQTIPRQVWLDKSGKRLIQWPIEEVENLRDKKISITGKKLEGGSTLEISGITASQVDVEVLFHLPELENGEWLDDPSEVDPQLLCSKQYESRSGKIGPFGLLALASKDLTEQTAVFFQIYRTSDRYVCLMCSDQSRSSLRHDLDKTTYGTIFDIDSNLKTISLRTLIDKSIIESFGDGGKACITSRVYPLLAIEKDAHLYIFNNGSQSVVISQLNAWSMKQAEIGHERNINCA 523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g00544 523 SUPERFAMILY Arabinanase/levansucrase/invertase 1 312 IPR023296 -
Tsu01g00544 523 Gene3D - 325 509 - -
Tsu01g00544 523 Pfam Glycosyl hydrolases family 32 C terminal 314 508 IPR013189 -
Tsu01g00544 523 CDD GH32_Fruct1-like 1 300 - -
Tsu01g00544 523 Gene3D Glycosyl hydrolase domain; family 43 1 324 IPR023296 -
Tsu01g00544 523 Pfam Glycosyl hydrolases family 32 N-terminal domain 1 311 IPR013148 -
Tsu01g00544 523 SMART glyco_32 1 469 IPR001362 GO:0004553|GO:0005975
Tsu01g00544 523 PANTHER BETA-FRUCTOFURANOSIDASE, INSOLUBLE ISOENZYME CWINV6 1 517 - -
Tsu01g00544 523 PANTHER BETA-FRUCTOFURANOSIDASE, INSOLUBLE ISOENZYME CWINV1-RELATED 1 517 - -
Tsu01g00544 523 SUPERFAMILY Concanavalin A-like lectins/glucanases 311 511 IPR013320 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g00544 Tsu-Chr1 4761345 4764422 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g00544 3 514 Glycoside Hydrolase AT1G55120 54.981 0.0 595
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g00544 K01193 - gmx:100777487 896.73