Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g00542 ATGGAGAACATTACAAAGGATGCATCCCCAAAAAGTATCAATTCTGAACAGCCATACAGAACTTGTTACCACTTTCAGCCCCTCAAAAATTGGATGAATGATCCTAATGGACCAATGTACTATAAAGGAGTTTACCATTTCTTCTACCAACGTAACCCCGATGGAGCAACCTTTGGTCATGACAAAATGGTATGGGGTCATTCTGTATCAAAAGATCTCATAAATTGGACTCATTTGAATGATGCTATTGAACCAAGTTGTGTTGGTGACTCAAAGAGTTGCTTCTCAGGCTCAGCCACAATACTTCCAGGAGAAAAACCTCTTATGTTGTATACAGGAATTGATGGAAAAGGACACCAAGTTCAAAACTTAGCTATACCAAAGAATCTATCTGATCCTTACTTAAGGGAATGGGAAAAACACCCTCAAAATCCTTTGATGACTGCACCTAGTGGAGTTGAAGTGAATGAATTCAGAGATCCTTCAACTGCATGGCAAGGAAAAGATGGAAAATGGAGAGTAATCATTGGTGCTCAAAAGGGTGATGAAGGAAAAGTTATTCTCTATAAAAGTGATGATTTTGTTAATTGGATTGTAGATCCTAATCCATTCTATGCAACAGATGGTACTGGAGTAGTTGAATGTCCAGAATTTTTTCCTGTTTATATCAATAGCACAAATGGGGTGGATACAACTATGGAAAATTCAAGTGTTAGACATGTCTTGAAGATAGGCTATTATCGTAGACATCTTGATTTCTACTTCATTGGAAATTATGCATCTGATTCTGATCAGGAAAAATTTATTTCTGATGCAAATTATACAGAAACTTACAAAGACTTAAGATTTGATTATGGTCTTTATTATGCTTCAAAGTCATTTTTTGACTATGCTACAAATAGGAGAATATTATGGGGATGGGTGGAAGAACATGACTCAAAACAAGATTCCATTGAAAAAGGATGGGCTGGTTTACagACAATTCCAAGGAAGATTTGGCTTGATAAAAGTGGAAAGCAATTAATTCAATGGCCAATTGAAGAGCTCGAAAAACTACGTGACAAGCAAATCAGTATCACAGGAGAGACACTCCTAAGCAGATCAATTCTTGAAGTAAAAGGTATCACTGCATCTCAGGCTGATGTGGAAGTCTTGTTTGGGCTACCTGATCTACAAAGTGCTGAGTTGCTAGAACCAAGTGAAGTTGATCCCCAAATACTTTCTACTAGTGAACAATATGCATCAAGAAAAGGCATGATAGGACCATTTGGTTTGCAAGTTTTAGCATCAAAAGACCAAACAGAGAGGACTACAATATCTTTCCGAATATATAGAGTCGTCGATAAATATATATGCTTGATGATAAGTGACCCAAGCAGGTCTTCATTGAGGCAGGGTCTTACTAAACCAATATATGCAACTGTCTTTGACATAGATCCCAATCTCAAAACaatctcactcagaaccttgATTGACAAGTCCATTATTGAGAGTTTTGGAGATGGAGGGAAAGCTTGCATAACAAGTAGAGTTTATCCCTTATTGGCGATAGAGAAAGATGCACATCTTTATGTATTCAACAATGGAAATCAAAGTGTGGTTATCTCACAACTTAATGCTTGGAGCATGAAGCAAGCAGAGTTTACAACAGAAAGCATAATATAG 1665 0.3658 MENITKDASPKSINSEQPYRTCYHFQPLKNWMNDPNGPMYYKGVYHFFYQRNPDGATFGHDKMVWGHSVSKDLINWTHLNDAIEPSCVGDSKSCFSGSATILPGEKPLMLYTGIDGKGHQVQNLAIPKNLSDPYLREWEKHPQNPLMTAPSGVEVNEFRDPSTAWQGKDGKWRVIIGAQKGDEGKVILYKSDDFVNWIVDPNPFYATDGTGVVECPEFFPVYINSTNGVDTTMENSSVRHVLKIGYYRRHLDFYFIGNYASDSDQEKFISDANYTETYKDLRFDYGLYYASKSFFDYATNRRILWGWVEEHDSKQDSIEKGWAGLQTIPRKIWLDKSGKQLIQWPIEELEKLRDKQISITGETLLSRSILEVKGITASQADVEVLFGLPDLQSAELLEPSEVDPQILSTSEQYASRKGMIGPFGLQVLASKDQTERTTISFRIYRVVDKYICLMISDPSRSSLRQGLTKPIYATVFDIDPNLKTISLRTLIDKSIIESFGDGGKACITSRVYPLLAIEKDAHLYVFNNGNQSVVISQLNAWSMKQAEFTTESII 554
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g00542 554 PANTHER BETA-FRUCTOFURANOSIDASE, INSOLUBLE ISOENZYME CWINV6 12 551 - -
Tsu01g00542 554 PANTHER BETA-FRUCTOFURANOSIDASE, INSOLUBLE ISOENZYME CWINV1-RELATED 12 551 - -
Tsu01g00542 554 SUPERFAMILY Arabinanase/levansucrase/invertase 15 346 IPR023296 -
Tsu01g00542 554 Gene3D Glycosyl hydrolase domain; family 43 28 357 IPR023296 -
Tsu01g00542 554 CDD GH32_Fruct1-like 30 334 - -
Tsu01g00542 554 SMART glyco_32 24 503 IPR001362 GO:0004553|GO:0005975
Tsu01g00542 554 ProSitePatterns Glycosyl hydrolases family 32 active site. 24 37 IPR018053 GO:0004553|GO:0005975
Tsu01g00542 554 Gene3D - 358 543 - -
Tsu01g00542 554 Pfam Glycosyl hydrolases family 32 C terminal 348 542 IPR013189 -
Tsu01g00542 554 Pfam Glycosyl hydrolases family 32 N-terminal domain 24 345 IPR013148 -
Tsu01g00542 554 SUPERFAMILY Concanavalin A-like lectins/glucanases 345 545 IPR013320 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g00542 Tsu-Chr1 4751055 4754606 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g00542 7 546 Glycoside Hydrolase AT3G13784 50.547 0.0 551
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g00542 K01193 - gmx:100806220 804.668
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g00542 01 4751055 4754606 Tsu01g00542 01 4751055 4754606 ECH