Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g00524 ATGCCAACAGATTTACATGATGCGGCGTCTAGGACGATAGGTGAATGTATTTATGCGGCGTTGATGCCACTCATAGCTGTTGTTGAGGCTTTGGTATTTGCTGTAACCGGTTGTTTCAACTCTCATCTTTCATTCACCATTTTTCACACTCATCATAAATCTCCTGCTAAGGACTTTGCTCGTCTTGCTCAAGAAACCAGATTTACTGTTAATGAAGTGGAGGCATTGCATGAGCTGTTTAAAAAGATAAGTAGCTCCTTAATTGATGATGGCTTGATTCACAAGGTGGAACTTCAATTGGCACTATTTCAAACACCAAATGGAGAAAATCTTTTTCTTGATCGAGTTTTTGATCTTTTTGATGAAAAGAGAAATGGTGTTATCGAGTTTGACGAATTTGTCCATGCACTCAGTATTTTCCACCCCTATGCACCAATAGATGAAAAAATAGATTTTGCATTTAAGCTCTATGACCTGAGGCAAACTGGGTTTATTGAGCCAGAGGAAGTCAAGCAAATGGTTATAGCGATTTTGATGGAATCTGATATGAATCTTTCTGATGATCTTCTTGAAGCTATTGTTGACAAGACAATTGCTGATGTTGATCAAGACAACGATGGTAAAATCAGTAAAGAAGATTGGAAAGCTTTTGCTAGTAAAAATCCGTCGCTATTGAAGAACATGACACTTCCTTATTTGAAGGATATCACCACTGTGTTTCctagttttattttcatatcAGAGGCTgaaatttga 756 0.3664 MPTDLHDAASRTIGECIYAALMPLIAVVEALVFAVTGCFNSHLSFTIFHTHHKSPAKDFARLAQETRFTVNEVEALHELFKKISSSLIDDGLIHKVELQLALFQTPNGENLFLDRVFDLFDEKRNGVIEFDEFVHALSIFHPYAPIDEKIDFAFKLYDLRQTGFIEPEEVKQMVIAILMESDMNLSDDLLEAIVDKTIADVDQDNDGKISKEDWKAFASKNPSLLKNMTLPYLKDITTVFPSFIFISEAEI 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g00524 251 CDD EFh 149 219 IPR002048 GO:0005509
Tsu01g00524 251 PANTHER CALCINEURIN B 7 250 IPR045198 GO:0005509|GO:0019722|GO:0019900
Tsu01g00524 251 PANTHER CALCINEURIN B-LIKE PROTEIN 10 7 250 - -
Tsu01g00524 251 Gene3D - 58 251 - -
Tsu01g00524 251 ProSitePatterns EF-hand calcium-binding domain. 202 214 IPR018247 -
Tsu01g00524 251 PRINTS Recoverin family signature 116 137 - -
Tsu01g00524 251 PRINTS Recoverin family signature 163 181 - -
Tsu01g00524 251 PRINTS Recoverin family signature 209 229 - -
Tsu01g00524 251 Pfam EF-hand domain pair 116 134 IPR002048 GO:0005509
Tsu01g00524 251 SUPERFAMILY EF-hand 60 243 IPR011992 -
Tsu01g00524 251 ProSiteProfiles EF-hand calcium-binding domain profile. 145 180 IPR002048 GO:0005509
Tsu01g00524 251 ProSiteProfiles EF-hand calcium-binding domain profile. 108 143 IPR002048 GO:0005509
Tsu01g00524 251 Pfam EF-hand domain pair 148 216 IPR002048 GO:0005509
Tsu01g00524 251 ProSiteProfiles EF-hand calcium-binding domain profile. 189 224 IPR002048 GO:0005509
Tsu01g00524 251 SMART efh_1 112 140 IPR002048 GO:0005509
Tsu01g00524 251 SMART efh_1 193 221 IPR002048 GO:0005509
Tsu01g00524 251 SMART efh_1 149 177 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g00524 Tsu-Chr1 4607817 4610806 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g00524 28 250 EF-hand Containing Proteins AT5G55990 57.399 2.73e-86 254
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g00524 K06268 - gmx:100810494 363.229
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g00524 01 4607817 4610806 Tsu01g00524 01 4607817 4610806 ECH