Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g00517 ATGGCTGATTCAACACCTACCGATTCTGTGTCGGTGGATATGGATTCCATCTCTCCTTCTCCTAAGGCATCTTTCTATCTATCTGCATTCTCTTTATTCATCTTCTTCGAACATATTATCAGAACATCCCATGGTTCTGTCTCTGTCGCTGTGTATGGAGACCAGGACAAGCCAGCTCTTATCACTTATCCTGATTTGGGTTTAAATTACGTCTCCTGCTTTCAGGGGTTATTATTTTGTCCGGAAGCATATTACTTGCTGCTCCACAATTTTTGCATATATCACATTAGTCCACCTGGGCATGAGTTGGGAGCAGCTGCAATTGATCCAGATTACCCTATTCTATCTGTAGATGACTTAGCCGATCAAATAGCTGAGGTGCTTAACTTTTTTGGTCTTAATGCAGTTATGTGTATGGGAGTAACTGCTGGGGCTTACATTCTTACCTTATTTGCTCTGAAATATCGACAACGTGTTCTTGGTTTGATACTTGTTTCTCCTCTATGTAAAGAACCATCTTGGTCTGAATGGTTGTACAACAAGGTCATGTCAAATTTACTGTACTTTTATGGCATGTGTGGGGTGGTAAAGGAAATATTGCTGCAGCGGTACTTTAGCAAGGAAATTCGCGGTGGTACTCAATTACCGGAGTCAGATATTGTCAAAGCATGCCGAAGGTCTTTGGATGAGAAGCAGAGCTTGAATGTCTGGCGGTTCCTCGAAGCTATTAATGGGAGACCCGACCTAAGTGAAGGATTAAGAAAATTACATTGCCGGTCACTAATTTTTGTTGGAGATATGTCTCCATTTCACTCAGAGGCACTCCATATCACTTCAAAGTTAGACAGACGATTCAGTGCCTTAGTTGAGGTTCAAGCATGCGGGTCAATGGTAACAGAGGAGCAGCCCCATGCTATGTTAATACCGATGGAGTATTTTCTTATGGGATATGGCCTGTACAGGCCATCCAGGTTGAGTGGTTCTGAAAATGAAGTTCTTTTAAAAGAAGTCCTGTACAATCCTGTGATGATGGGATTATTCATTCATCAATCATCAAGCCGGAGCTTCACTGATGTTGCTGAGTTAGCTATACAGTCTGCTAGGGAAAATGGTGATCAGGGGAAAGCTACTTCTTATGTAAATGCCTTTTGTGCATGCTCTTGTACAACAAGAATAACCAGGGAGACAAAATTCTTGAATTCTTCCAACAAGAAGAGGAAACTTAAGCAACAAGCAACTGAAGGTGCagcaaagaagaaaacaaagaagaGATGCAATGATGATATAGGGAGAAACTGGGGTTACTCAACTAAGTTGATGCTATATGATGACCCTTGGAAAATCAAGAAAGTGTTGGAAAAGAGTGATGTTGACCATTCGAGTAGACTATTGCTCGATAAAAATTTGGTTGAGGGTTTGATGTTGCCTGTGTTGAGTGTTAATGCTGCGAATGAAATTCAAGTGAAAATATGGGATATCGACACTAAATCTATGCACTTGCTCAAACTCAACAGATGGGGTTCAGGAAGTTATGTTTTAATTGACGGATGGGTCAGAGACTTTGTAACTAGAAGGAGCTTACAGAAAGGAGATGAGATTGGTCTTCATTGGGATCAATACAACCGACATTTTAATTTCACCGTTTTTCAAGTCTTCAATCCAATCAAGATAGACAATAGGCTTAACAAATAA 1692 0.4019 MADSTPTDSVSVDMDSISPSPKASFYLSAFSLFIFFEHIIRTSHGSVSVAVYGDQDKPALITYPDLGLNYVSCFQGLLFCPEAYYLLLHNFCIYHISPPGHELGAAAIDPDYPILSVDDLADQIAEVLNFFGLNAVMCMGVTAGAYILTLFALKYRQRVLGLILVSPLCKEPSWSEWLYNKVMSNLLYFYGMCGVVKEILLQRYFSKEIRGGTQLPESDIVKACRRSLDEKQSLNVWRFLEAINGRPDLSEGLRKLHCRSLIFVGDMSPFHSEALHITSKLDRRFSALVEVQACGSMVTEEQPHAMLIPMEYFLMGYGLYRPSRLSGSENEVLLKEVLYNPVMMGLFIHQSSSRSFTDVAELAIQSARENGDQGKATSYVNAFCACSCTTRITRETKFLNSSNKKRKLKQQATEGAAKKKTKKRCNDDIGRNWGYSTKLMLYDDPWKIKKVLEKSDVDHSSRLLLDKNLVEGLMLPVLSVNAANEIQVKIWDIDTKSMHLLKLNRWGSGSYVLIDGWVRDFVTRRSLQKGDEIGLHWDQYNRHFNFTVFQVFNPIKIDNRLNK 563
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g00517 563 PANTHER N-MYC DOWNSTREAM REGULATED 8 347 IPR004142 -
Tsu01g00517 563 MobiDBLite consensus disorder prediction 402 423 - -
Tsu01g00517 563 Gene3D alpha/beta hydrolase 31 316 IPR029058 -
Tsu01g00517 563 Pfam Ndr family 37 321 IPR004142 -
Tsu01g00517 563 SUPERFAMILY DNA-binding pseudobarrel domain 444 549 IPR015300 -
Tsu01g00517 563 Gene3D - 445 549 IPR015300 -
Tsu01g00517 563 PANTHER PROTEIN NDL2 8 347 - -
Tsu01g00517 563 CDD B3_DNA 446 549 IPR003340 GO:0003677
Tsu01g00517 563 SUPERFAMILY alpha/beta-Hydrolases 39 314 IPR029058 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g00517 Tsu-Chr1 4534839 4541805 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g00517 - - gmx:100815084 599.742
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g00517 01 4534839 4541805 Tsu01g00517 01 4534839 4541805 ECH