Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g00514 ATGGCCGACGAATCCCAATACGACACCACTCCTCCCTCCCTCAAACGCAAGTACGATGAACAACCACCTCACTCCAGACCCACCGGTTTCTCCGACGGACCTCCTCCTCCTTCCTATAACAACGTCCCTCCTCCCGCCACCACCGAATTCGAACTCATCAAACAACGCGCTCAAGAAGTCGCCGCTCGTCTCCTCAGCGGCTCTGCTCCTTCCGATATCGCTAAACGTACCAAATTCGATAACGGTCCTCCTCCCTCTTACGATTCATCAGATTTGAAAAGTCAATATTCAGCTCCTATGAGTATACCTTCGTATACGCATCAAGGTTCGAGCAAGAAAATTGAAATCCCTAATGGGAGAGTTGGCGTTATCATTGGAAAAGCTGGAGAAACTATCAAGTATCTTCAGTTACAATCTGGTGCTAAAATTCAAGTGACTCGTGATATGGATGCTGATCCTAATTCTCCGAATAGGCTTGTTGAGCTTACGGGTACTTCTGATGCTATTGCTACTGCTGAGAAACTCATCAATGATGTTCTTGCTGAGGCTGAATCTGGAGGTAATGGCCTTGTTACTCGACGAATGGGTGGACAAGCTGGCGCTGATGAGTTTTCAATGAAGATCCCAAATAACAAGGTCGGCCTTATAATTGGTAAAGGTGGAGAGACCATAAAGAATATGCAAGCGACAACTGGATCGAGAATTCAGGTGATTCCTCTTCATCTCCCCCCAGGTGACACATCCACCGAAAGAACATTAAAAATTGAAGGGACATCTGAACAAATTGAATCTGCAAAACAACTGGTTGATTCAATCCTCAGTGGTGAGaaTCGTCTTAGAAATCCATCAATGTCTGGTGGATACTCTCAGCAAGGATACCAAGCTCGTCCACCCTCTAGCTGGGCTCCCCCTGCTGCTTCAATGCAACAACCTGGTTATGGCTATGTGCAACCCGGAGCATACTCTGGTCCATCACCCCAGTACAATGTGCCCCAGCAACCATATGCAGGTTATCCTCCTCAGTCAGCTGGTGGATATTCTACCAGTTGGGACCAGTCCACTGCAACTACACAGCAGGCTGCTCATGCTGGGTATGATTACTATAATCAACAGGCTCAGCAACAGCAGAATCCTGGTGGACCTGCTCCTCCAGCTGACGGGACTGCTTATAATTACAGTCAACCACCTTCCTCTGGTTATAACCAACCGGGACAAGGCTATGGTCAGGATGGCTATGGTGCATATCAACAACCACCACAATCAGGGTATGGTCAGCCACCATCATATGATCAGCAGCAAGGTTATGGCTCGGCCCCAAGCTATGGCTCTGCACAAGATGGCCAAACTACCAACTATGGATCGCAAGGGGATTCATCTCAAGTTCCACCTGTCCAACCTTCCCAGCAAGGTTATGGTAGCAGCCAACAGCCTAGCCCAAATGCTGCTAACTATTCAGCACAAGGTGCCGCTCAACCAGGTTATGGCGCCCCCCCAACCTCCCAAGCAGCTTATGGCAATCAAACCCAAGTCCCGTCTGGCTATGGAGCTCCTCCATCTCAAAAGCCTAGTAGCACTCCTCCTGCATATGGACAATCACAGTCACCTAATGCAGCAGCTGGTTATGGTCAAACAGGGTATCCCTCTTCCCAGCCCCCACCTGCTGCATATTCCCAGCCAGAAACAGGCTCTCAAAGAGCACCACCATCTGGTTATGGCAGTGCTGTTCAACCAGGGTATGGTCCTCCATCGTATGGTGCTCCAGCAGGTAGTCAAGCTGGTTATGGTCAGGCACCACCGTCATACAGCAGCGGTTCTTATGGTGCTGGTTATCCTCAGGCCCCAGCATATTCTGCAGATGGTAATGCAAGTGGTGGTAGCTATGATGGAGCACCTGCACAAGCAGGTCAGCAGGCTAGTGTTGCCAAGTCACCCAAGAGCTGA 1941 0.4961 MADESQYDTTPPSLKRKYDEQPPHSRPTGFSDGPPPPSYNNVPPPATTEFELIKQRAQEVAARLLSGSAPSDIAKRTKFDNGPPPSYDSSDLKSQYSAPMSIPSYTHQGSSKKIEIPNGRVGVIIGKAGETIKYLQLQSGAKIQVTRDMDADPNSPNRLVELTGTSDAIATAEKLINDVLAEAESGGNGLVTRRMGGQAGADEFSMKIPNNKVGLIIGKGGETIKNMQATTGSRIQVIPLHLPPGDTSTERTLKIEGTSEQIESAKQLVDSILSGENRLRNPSMSGGYSQQGYQARPPSSWAPPAASMQQPGYGYVQPGAYSGPSPQYNVPQQPYAGYPPQSAGGYSTSWDQSTATTQQAAHAGYDYYNQQAQQQQNPGGPAPPADGTAYNYSQPPSSGYNQPGQGYGQDGYGAYQQPPQSGYGQPPSYDQQQGYGSAPSYGSAQDGQTTNYGSQGDSSQVPPVQPSQQGYGSSQQPSPNAANYSAQGAAQPGYGAPPTSQAAYGNQTQVPSGYGAPPSQKPSSTPPAYGQSQSPNAAAGYGQTGYPSSQPPPAAYSQPETGSQRAPPSGYGSAVQPGYGPPSYGAPAGSQAGYGQAPPSYSSGSYGAGYPQAPAYSADGNASGGSYDGAPAQAGQQASVAKSPKS 646
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g00514 646 PANTHER K DOMAIN-CONTAINING PROTEIN-RELATED 56 639 - -
Tsu01g00514 646 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 112 189 IPR036612 GO:0003723
Tsu01g00514 646 MobiDBLite consensus disorder prediction 277 357 - -
Tsu01g00514 646 CDD KH-I 111 176 - -
Tsu01g00514 646 MobiDBLite consensus disorder prediction 369 646 - -
Tsu01g00514 646 MobiDBLite consensus disorder prediction 277 297 - -
Tsu01g00514 646 MobiDBLite consensus disorder prediction 414 487 - -
Tsu01g00514 646 Pfam KH domain 205 270 IPR004088 GO:0003723
Tsu01g00514 646 Pfam KH domain 112 178 IPR004088 GO:0003723
Tsu01g00514 646 MobiDBLite consensus disorder prediction 500 570 - -
Tsu01g00514 646 MobiDBLite consensus disorder prediction 28 43 - -
Tsu01g00514 646 MobiDBLite consensus disorder prediction 390 405 - -
Tsu01g00514 646 ProSiteProfiles Type-1 KH domain profile. 201 269 - -
Tsu01g00514 646 MobiDBLite consensus disorder prediction 322 357 - -
Tsu01g00514 646 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 56 639 - -
Tsu01g00514 646 MobiDBLite consensus disorder prediction 630 646 - -
Tsu01g00514 646 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 205 276 IPR036612 GO:0003723
Tsu01g00514 646 MobiDBLite consensus disorder prediction 63 95 - -
Tsu01g00514 646 CDD KH-I 203 269 - -
Tsu01g00514 646 Gene3D K Homology domain, type 1 199 298 IPR036612 GO:0003723
Tsu01g00514 646 Gene3D K Homology domain, type 1 104 198 IPR036612 GO:0003723
Tsu01g00514 646 ProSiteProfiles Type-1 KH domain profile. 109 176 - -
Tsu01g00514 646 MobiDBLite consensus disorder prediction 1 49 - -
Tsu01g00514 646 SMART kh_6 200 274 IPR004087 GO:0003676
Tsu01g00514 646 SMART kh_6 108 181 IPR004087 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g00514 Tsu-Chr1 4495622 4501095 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g00514 K13210 - gmx:100782717 791.956
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g00514 01 4495622 4501095 Tsu01g00514 01 4495622 4501095 ECH