Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g00502 AtggcttcttcttctcctcctcctccgtcgcaatcttcttcttcaactccttCTGCTTCTTACATCACTCACCTTCCCATTGctccttcttctccttctcaTTCCAGTGAGAAGGTTCTGGAAGAAGAGCAACCGCGAGTTCCGATTCATATTGTTACGAAAGCGTATCAACTTCCTGTGGATTTTCTTGAACCTTCTCCTCAAGCGAAGCTTGTTATTGGTTTTGATTGTGAGGCTGTTGACTTGTGTCGCTATGGAACTCTTTGCATAATACAgCTTGCATTTCCTGATGCTATATACCTGGTTGATGCAATCGAAGGGGGAAAAGTACTTATCGAAGCCTGTAAGCCTGCACTTGAGTCTGAGTTTGTCACAAAAGTGATTCATGATTGCAAACGCGACAGTGAGGCACTGTACTTTCAGTTTGGCATCAAGTTAAACAACGTTGTGGATACCCAGATTGCTTATTCACTTCTAGAAGAGCAAGAAGGACAAAAGAGATTGCCAGATGACTATATTTCACTAGTTGGTCTCCTTGCAGATCCACGTTATTGTGGTATTAAATGCGTCGTGGTAtccattaaattatatttgttgGTCATGGACCCGAACTTTTGGACTTATAGACCTTTATCTGAACAAATGATTCACTCTGCTGCTGATGATGTCCGTTTCCTTCTCTACATTTATCACCAAATGATGGCAAAATTAACTGAAAGGTCTTTATGGCATCTTGCTGTTCGTGGTGCCTTGTACTGCCGGTGTTTCTGTGTGAACAGTAATGATTATGCTGATTGGCCATCTCTACCTCCAATTCCAGATATGCTGAACATTGATGGAAATGGTCCTGAGGAAGAAATTCTTTCAGTTCTTGATGTTCCTCCAGGAAAGATGGGATGCATTATTGGGAAAAAAGGGGCTTCAATTATGGCAATTAAGGAGTCTTGCAATGCTGAAATTCTCATAGGAGGTCCCAGGGGTCCACCTGACAAGGTCTTCATCATTGGACCAGTGAAGCAGGTGAAGAAAGCTGAGGCCATGTTAAGGGGTAGACTATTGCCCGTCTTCTAG 1071 0.3922 MASSSPPPPSQSSSSTPSASYITHLPIAPSSPSHSSEKVLEEEQPRVPIHIVTKAYQLPVDFLEPSPQAKLVIGFDCEAVDLCRYGTLCIIQLAFPDAIYLVDAIEGGKVLIEACKPALESEFVTKVIHDCKRDSEALYFQFGIKLNNVVDTQIAYSLLEEQEGQKRLPDDYISLVGLLADPRYCGIKCVVVSIKLYLLVMDPNFWTYRPLSEQMIHSAADDVRFLLYIYHQMMAKLTERSLWHLAVRGALYCRCFCVNSNDYADWPSLPPIPDMLNIDGNGPEEEILSVLDVPPGKMGCIIGKKGASIMAIKESCNAEILIGGPRGPPDKVFIIGPVKQVKKAEAMLRGRLLPVF 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g00502 356 MobiDBLite consensus disorder prediction 1 40 - -
Tsu01g00502 356 MobiDBLite consensus disorder prediction 1 35 - -
Tsu01g00502 356 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 278 352 IPR036612 GO:0003723
Tsu01g00502 356 SMART 35exoneu6 49 238 IPR002562 GO:0003676|GO:0006139|GO:0008408
Tsu01g00502 356 SMART kh_6 285 353 IPR004087 GO:0003676
Tsu01g00502 356 CDD Egl_like_exo 61 257 - -
Tsu01g00502 356 PANTHER - 21 352 - -
Tsu01g00502 356 ProSiteProfiles Type-1 KH domain profile. 286 348 - -
Tsu01g00502 356 Pfam 3'-5' exonuclease 67 237 IPR002562 GO:0003676|GO:0006139|GO:0008408
Tsu01g00502 356 Pfam KH domain 291 349 IPR004088 GO:0003723
Tsu01g00502 356 SUPERFAMILY Ribonuclease H-like 24 265 IPR012337 -
Tsu01g00502 356 PANTHER EGALITARIAN, ISOFORM B 21 352 - -
Tsu01g00502 356 CDD KH-I 291 348 - -
Tsu01g00502 356 Gene3D K Homology domain, type 1 290 353 IPR036612 GO:0003723
Tsu01g00502 356 Gene3D - 3 254 IPR036397 GO:0003676
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g00502 K18740 - gmx:100788577 538.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g00502 01 4397424 4402609 Tsu01g00502 01 4397424 4402609 ECH