Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g00333 ATGTTGGAAGCAATGGAAAGTTCAGTGAATGGTGGATTCTCACAGCATTTACAAAGTTTTGGAGATAGTAGCGAAGAAGAACTTTCTGTTCTTCCTCGTCATACCAAAGTTGTTGTTACTGGTAACAACCGTACTAAATCAGTTCTTGTTGGTCTTCGTGGTGTTGTTAAGAAAGCTGTTGGTCTTGGTGGATGGCATTGGCTGGTTCTTACCAATGGTATTGAAGTGAAGCTGCAGAGAAATGCTCTTAGTGTGATTGAACCACCCACCGGTGACGAGGAAGATGATGACCTTGAAATTGAAAATACCATTTGGCATGGATCAGATATGGCATCAGATGACACTCAAAAATCCAACAAATCAAGGAATAGAATGAATAGATCATTAGGATCATCTCACAAGAGCATAAGCAGGTCTTTCTCTGTTGATTCACAGTCCAAGGGATCCATTTCTATGCCTCATGCGTGGACGAAGGTTgacttgagcaaattggaaatGTCTGCGTTGTGGAGATATTGGCGACACTTCAATCTGGTGGATGATGTTCCAAATCCATCGAAAGAGCAGCTGGTAGATGTTGTTCAGAGGCATTTCATGTCACAGCAAATGGACGAGTTGCAAGTTATTAGGGGATTTGTCAAAGCTGCAAAAAGACTTAAGACAACTATGTGCAAATGA 678 0.4041 MLEAMESSVNGGFSQHLQSFGDSSEEELSVLPRHTKVVVTGNNRTKSVLVGLRGVVKKAVGLGGWHWLVLTNGIEVKLQRNALSVIEPPTGDEEDDDLEIENTIWHGSDMASDDTQKSNKSRNRMNRSLGSSHKSISRSFSVDSQSKGSISMPHAWTKVDLSKLEMSALWRYWRHFNLVDDVPNPSKEQLVDVVQRHFMSQQMDELQVIRGFVKAAKRLKTTMCK 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g00333 225 Pfam Sin3 binding region of histone deacetylase complex subunit SAP30 164 217 IPR025718 GO:0005515
Tsu01g00333 225 Gene3D - 139 225 IPR038291 -
Tsu01g00333 225 PANTHER HISTONE DEACETYLASE COMPLEX SUBUNIT SAP30 SIN3-BINDING PROTEIN 1 225 - -
Tsu01g00333 225 MobiDBLite consensus disorder prediction 122 150 - -
Tsu01g00333 225 MobiDBLite consensus disorder prediction 103 150 - -
Tsu01g00333 225 PANTHER SAP30 1 225 IPR024145 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g00333 Tsu-Chr1 2706486 2709403 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g00333 - - gmx:100809195 384.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g00333 01 2706486 2709403 Tsu01g00333 01 2706486 2709403 ECH