Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g05341 ATGAAGAAGCAACTAGCACCACTTGTTCTATTTTCTCTCACACTAATAATCTCACTCATTCATTCCACCACCGCCGGTGCCGCCACCTCCGGCAGCCACAATATCACTCGCATTCTAGCCAAACACCCTGGATTCTCCACCTTTAACCATTACCTCACCATCACTCACCTCGCCGATGAAATCAACCGCCGTCAAACCATCACAATCCTCGCCATCGACAATGCCGCCATGTCATCGCTCCTCGACAAACACCTCTCCGTCGCCACTCTCAAAAACGTCCTCTCCCTCCATGTCTTAGTCGACTACTTCGGCGCCAAAAAACTCCATCAAATCACCAACGGCACAACTCTCGTTTCCTCCATGTTTCAAGCAACCGGATCCGCCGCCGGAACAGCCGGTTACGTCAATGTAACAAATCTCAAAGGCGGTAAAGTCGGTTTCGCCGCTGAAGACAACGACGGATTACACTCATTCTACGTAAAATCCATTGAAGAACTTCCTTACGTCATCTCCGTTCTTGAAATCAGTCAACCTTTAAGCTCCGCCGACGCCGAAGCACCAACGGCAGCGCCGAGCGATATCGATTTAATCTCAATTATGTCAAAACAAGGTTGCAAAGCTTTCGCTGATTTGTTACGCGTTTCAAAAGCGCTTCCAACTTTCAAAGAAACCGTAGACGGAGGTCTAACCGTTTTCTGTCCAACTGACAGCGCCGTTAACAGTTTCTCAGCAAAATACAAAAACCTAACAGATGCTAAAAAAGTTTCACTTCTGTTATATCACGGTGTTCCCGTTTATCAATCGTTACAAATGTTGAAATCAAATAACGGAATTATGAACACTTTAGCAACAGAAGGTGCTAATAAATACGATTTCACAGTTCAAAACGACGGTGAAGATGTTAACCTTGAAACAAAAGTTAACACCGCGAATATAATCGGAACTTTGATAGATCAAGATCCATTTGTGGTGTATAAGATTGACAAAGTTTTGATGCCAAGAGAATTGTTTAAGGGAGTGAAAGAAGATTTAGCACCGGCAGAGTCACCTAAACCAGCGAAGAAGAAGAAGACGACGACGAAGAAGGGTAAAGCGCCGGCGGCGGATGAAGATGCTGATTCACCGGCGGATGGACCAGATGCGGATGCAGATTCCGAGGATGACAAAGCTGCTGATGATAATGGAGTCAGTGGATTAAATCAAGGGTTCAGATTCGTTATGGTATTTTTCAGTATTTTTATTGGGTTTTTGGTACTATAA 1260 0.4476 MKKQLAPLVLFSLTLIISLIHSTTAGAATSGSHNITRILAKHPGFSTFNHYLTITHLADEINRRQTITILAIDNAAMSSLLDKHLSVATLKNVLSLHVLVDYFGAKKLHQITNGTTLVSSMFQATGSAAGTAGYVNVTNLKGGKVGFAAEDNDGLHSFYVKSIEELPYVISVLEISQPLSSADAEAPTAAPSDIDLISIMSKQGCKAFADLLRVSKALPTFKETVDGGLTVFCPTDSAVNSFSAKYKNLTDAKKVSLLLYHGVPVYQSLQMLKSNNGIMNTLATEGANKYDFTVQNDGEDVNLETKVNTANIIGTLIDQDPFVVYKIDKVLMPRELFKGVKEDLAPAESPKPAKKKKTTTKKGKAPAADEDADSPADGPDADADSEDDKAADDNGVSGLNQGFRFVMVFFSIFIGFLVL 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g05341 419 ProSiteProfiles FAS1/BIgH3 domain profile. 32 198 IPR000782 -
Trre9g05341 419 ProSiteProfiles FAS1/BIgH3 domain profile. 192 331 IPR000782 -
Trre9g05341 419 FunFam Fasciclin-like arabinogalactan protein 10 185 334 - -
Trre9g05341 419 MobiDBLite consensus disorder prediction 343 394 - -
Trre9g05341 419 SUPERFAMILY FAS1 domain 189 334 IPR036378 -
Trre9g05341 419 MobiDBLite consensus disorder prediction 373 389 - -
Trre9g05341 419 Gene3D FAS1 domain 197 333 IPR036378 -
Trre9g05341 419 Gene3D FAS1 domain 32 162 IPR036378 -
Trre9g05341 419 FunFam Fasciclin-like arabinogalactan protein 2 31 172 - -
Trre9g05341 419 SMART fasc_3 230 334 IPR000782 -
Trre9g05341 419 PANTHER FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 8 406 IPR033254 -
Trre9g05341 419 SUPERFAMILY FAS1 domain 38 151 IPR036378 -
Trre9g05341 419 Pfam Fasciclin domain 44 120 IPR000782 -
Trre9g05341 419 Pfam Fasciclin domain 205 333 IPR000782 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g05341 Trre-Chr9 58236633 58237892 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g05341 - - gmx:100799605 551.592
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre9g05341 9 58236633 58237892 Trre9g05341 9 58236633 58237892 ECH