Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g05214 ATGGCGAAAGTGGTGTACATGTCTTTACCTTTCCTCTCAGAACCCCACAAAACCATAGCTTCTTCTTCTTCATCACCTTCTTCAAAACCATTGAAGCTTCCTCATAGAACACGCAGCACTAACATATCCATTTCCTCATCCACCAATGGTTCTGCAAACCGTTCTGTTAAACCCCAGAAGTTTAATTCAGATATTTCTCCTCACAGAGCTGTGTCAGCTGTGAGATTGATGAGAATTGAACTTGGTGGTGCTTTTGCTGATCTTCTCAATGAGAAAGGAAAAGGTTCTGGTGAAAATGAGATGGGTTATGTTCAAAGAACACTTGGATTTCGCACTCGAGAGTTAAATAATCAAGACCTTAGATTGGTTACAGACATTGTTGGCGGCGCAATTCGTTGGAGGAGATACCTTGATCATTTAATCAGTTCAGTGTGTCATATAAAAGATATATCTAGTATGGAACCTCTTCTATTACAGATTCTACGAATTGGCGTCTATGAGATTGTGAAATTAGATATGCCACCTTATGCTGTTGTAGATGAGAATGTGCAGCTTGCCAAAGCTGCTCTCAGGCCGGGTGCTGGCAACATGGTCAATGGAATTCTCCGAAAACTAGTTGTGCTTAAGGAAAATGAAATGCTTCCTTTGCCCAAAGTGGAGGGCGATGATCGTTCTCAAGCACGTGCCCTGGCAACTCTCTACTCACATCCAGTTTGGATCGTGAGGAGATGGACGAAGTATCTTGGACAGGAAGAAACCATTAAATTGATGATATGGAACAACAGTGAACCAAGTTTTAGCTTAAGAGCAAACCGGGCAATAGGTTTTTCAAGAGATGACCTTGTGACACAGCTTAATGAATTGAAGGTCCCACACAAGCTTTCATTGCATTTGGATGACTTTGTTCGCATCAAAACTGGGTTGCAGTCTATCATTCACGCCGGCCTACTCAAAAAGGGTTTATGTGCTGTTCAGGATGAGAGTGCAGGTCTGATTGTTTCTATTGTGGATCCTCAACCTGGTGAAACCATCGTTGATTGTTGTGCTGCTCCTGGTGGAAAGACCCTCTACATGGCCTCTCATTTAAGTGGACAAGGTATGGTATATGCAGTTGATGTAAATAGCGGTAGGTTGAGAATTCTTAAAGAGACAGCAAAGTTGCACCAAGTAGATGGTGTCGTTACCACCGTCCATGCCGATCTTCGTACATTAACTGACGGTGCACCACTTAAGAGTAACAAAGTTTTGTTGGATGCACCATGCTCAGGACTTGGTGTTCTTTCAAAGAGAGCGGACTTACGGTGGAACAGGAAGCTAGAGGACATGGAAGAATTGAGAAACTTACAGGATGAGCTCCTTGATGCAGCATCCACATTGGTAAAACCCGGAGGAGTATTGGTTTACAGCACGTGCTCCATAGATCCTGAAGAGAATGATGATAGGGTAGCTGCATTTCTAGTAAGACATCCGGATTTTCACATTGATCCTGTAGACAGATATGTTCCACCTGATTTCGTGACACCAAATGGTTTCTATTTCTCCAACCCGGTAAAACATTCATTAGACGGCTCCTTTGCAGCTCGTTTGGTACGTGCTTTATAA 1602 0.4301 MAKVVYMSLPFLSEPHKTIASSSSSPSSKPLKLPHRTRSTNISISSSTNGSANRSVKPQKFNSDISPHRAVSAVRLMRIELGGAFADLLNEKGKGSGENEMGYVQRTLGFRTRELNNQDLRLVTDIVGGAIRWRRYLDHLISSVCHIKDISSMEPLLLQILRIGVYEIVKLDMPPYAVVDENVQLAKAALRPGAGNMVNGILRKLVVLKENEMLPLPKVEGDDRSQARALATLYSHPVWIVRRWTKYLGQEETIKLMIWNNSEPSFSLRANRAIGFSRDDLVTQLNELKVPHKLSLHLDDFVRIKTGLQSIIHAGLLKKGLCAVQDESAGLIVSIVDPQPGETIVDCCAAPGGKTLYMASHLSGQGMVYAVDVNSGRLRILKETAKLHQVDGVVTTVHADLRTLTDGAPLKSNKVLLDAPCSGLGVLSKRADLRWNRKLEDMEELRNLQDELLDAASTLVKPGGVLVYSTCSIDPEENDDRVAAFLVRHPDFHIDPVDRYVPPDFVTPNGFYFSNPVKHSLDGSFAARLVRAL 533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g05214 533 PRINTS Viridiplantae FMU-related RCMT signature 74 97 IPR023268 -
Trre9g05214 533 PRINTS Viridiplantae FMU-related RCMT signature 213 226 IPR023268 -
Trre9g05214 533 PRINTS Viridiplantae FMU-related RCMT signature 98 114 IPR023268 -
Trre9g05214 533 PRINTS Viridiplantae FMU-related RCMT signature 490 502 IPR023268 -
Trre9g05214 533 PANTHER NOP2 YEAST -RELATED NOL1/NOP2/FMU SUN DOMAIN-CONTAINING 192 531 IPR023267 GO:0001510
Trre9g05214 533 SUPERFAMILY NusB-like 105 240 IPR035926 -
Trre9g05214 533 Pfam NusB family 100 206 IPR006027 GO:0003723|GO:0006355
Trre9g05214 533 FunFam 16S rRNA (Cytosine(967)-C(5))-methyltransferase RsmB 223 327 - -
Trre9g05214 533 ProSiteProfiles SAM-dependent MTase RsmB/NOP-type domain profile. 256 532 IPR001678 GO:0008168
Trre9g05214 533 Gene3D - 85 218 IPR035926 -
Trre9g05214 533 MobiDBLite consensus disorder prediction 16 63 - -
Trre9g05214 533 Gene3D Sun protein; domain 3 223 329 - -
Trre9g05214 533 Pfam 16S rRNA methyltransferase RsmB/F 335 529 IPR001678 GO:0008168
Trre9g05214 533 Gene3D Vaccinia Virus protein VP39 331 532 IPR029063 -
Trre9g05214 533 FunFam Ribosomal RNA small subunit methyltransferase B 66 215 - -
Trre9g05214 533 FunFam Ribosomal RNA small subunit methyltransferase B 328 532 - -
Trre9g05214 533 PRINTS RNA (C5-cytosine) methyltransferase signature 514 531 IPR023267 GO:0001510
Trre9g05214 533 PRINTS RNA (C5-cytosine) methyltransferase signature 345 355 IPR023267 GO:0001510
Trre9g05214 533 PRINTS RNA (C5-cytosine) methyltransferase signature 463 479 IPR023267 GO:0001510
Trre9g05214 533 PRINTS RNA (C5-cytosine) methyltransferase signature 316 330 IPR023267 GO:0001510
Trre9g05214 533 PRINTS RNA (C5-cytosine) methyltransferase signature 413 425 IPR023267 GO:0001510
Trre9g05214 533 CDD AdoMet_MTases 343 469 - -
Trre9g05214 533 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 227 531 IPR029063 -
Trre9g05214 533 NCBIfam 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 110 531 IPR004573 GO:0006364|GO:0008649
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g05214 Trre-Chr9 57211838 57216545 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g05214 K03500 - gmx:100779327 901.353
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre9g05214 9 57211838 57216545 Trre9g05214 9 57211838 57216545 ECH