Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g05199 ATGGCGCCTGTGGCAGCGAGAAGCGCAGGCGCTGTTGGTATCGGAACCGCCATCATCATCTCTCTCGCCGTCGCTTATTTCTTCTGCGACCGTCGAAACAATTCATCAAAGAACAACAAGAAGAAGACATCAAAGAATGGAATCATTAACGCCATTGGTAACACTCCTTTGATTCGAATCAATAGTCTCTCTGATGCCACTGGTTGCGAAATTCTTGGCAAGTGTGAGTTTTTGAATCCTGGAGGGAGTGTTAAAGATCGTGTTGCAGTTCAAATTATTCAAGAGGCTTTGGAATCTGGGCAGCTACGTCCAGGTGGAATAGTTACTGAAGGGAGTGCCGGAAGCACTGCCATTAGCGTTGCTACTGTTGCTCCTGCTTATGGATGTAAATGCCATGTGGTTATTCCAGATGATGCTGCCATTGAGAAGTCTCAAATAATTGAAGCCCTTGGAGCAACTGTTGAAAGAGTACGACCAGTGTCAATCACTCACAAAGACCATTTTGTCAATATTGCAAGAAGACGGGCATCTGAAGCAAATGAGTTCGCATTAAAGCATAGAAAATCACAACCTAATGGCACAGACGCGCAGCAAATAAATGGTTATAAATCTGACGGAGACACCAACAGCTCACCTTTTCCTAATGATTGTCAAGGAGGCTTCTTTGCCGATCAGTTTGAGAACCTAGCAAACTTCAGGGCCCATTATGAGGGTACAGGACCTGAGATTTGGGAACAGACAAATGGAAGGTTAGATGCATTTGTTGCAGCAGCAGGAACTGGTGGTACTTTGGCTGGTGTTTCCAAGTTTCTTCAGGAAAAGAATCCAAACATCAAGTGTTACCTCGTAGATCCTCCTGGTTCTGGCTTGTTTAATAAGGTAACGAGAGGGGTAATGTACACCAAAGAGGAGGCAGAAGGACGGAGACTTAAGAATCCATTCGACACTATAACAGAAGGAATCGGAATTAACAGGGTAACAAGGAATTTTGCAGAGGCAAAACTTGATGGGGCCTTTAGAGGTACAGATATGGAGGCTGTTGAAATGGCCAGGTTTCTCGTGAAGAATGATGGGCTCTTCCTTGGGAGTTCTTCTGCAATGAACTGTGTTGGAGCAGTTAGAATAGCGCAATCACTTGGCCCTGGTCACACAATTGTTACCATTCTTTGCGACAGCGGAATGAGACATTTGAGCAAGTTTTATGATGCTGAATACTTGTCTCAGCTCGGTCTGACACCGAAAGCAACTGGATTAGAGTTCTTGGGTATCAAATGA 1275 0.4471 MAPVAARSAGAVGIGTAIIISLAVAYFFCDRRNNSSKNNKKKTSKNGIINAIGNTPLIRINSLSDATGCEILGKCEFLNPGGSVKDRVAVQIIQEALESGQLRPGGIVTEGSAGSTAISVATVAPAYGCKCHVVIPDDAAIEKSQIIEALGATVERVRPVSITHKDHFVNIARRRASEANEFALKHRKSQPNGTDAQQINGYKSDGDTNSSPFPNDCQGGFFADQFENLANFRAHYEGTGPEIWEQTNGRLDAFVAAAGTGGTLAGVSKFLQEKNPNIKCYLVDPPGSGLFNKVTRGVMYTKEEAEGRRLKNPFDTITEGIGINRVTRNFAEAKLDGAFRGTDMEAVEMARFLVKNDGLFLGSSSAMNCVGAVRIAQSLGPGHTIVTILCDSGMRHLSKFYDAEYLSQLGLTPKATGLEFLGIK 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g05199 424 PANTHER CYSTATHIONINE BETA-SYNTHASE 47 405 - -
Trre9g05199 424 CDD CBS_like 53 398 - -
Trre9g05199 424 SUPERFAMILY Tryptophan synthase beta subunit-like PLP-dependent enzymes 46 405 IPR036052 -
Trre9g05199 424 Gene3D - 79 186 IPR036052 -
Trre9g05199 424 ProSitePatterns Cysteine synthase/cystathionine beta-synthase P-phosphate attachment site. 74 92 IPR001216 GO:0006535
Trre9g05199 424 Gene3D - 194 406 IPR036052 -
Trre9g05199 424 FunFam Cysteine synthase 233 397 - -
Trre9g05199 424 Pfam Pyridoxal-phosphate dependent enzyme 51 391 IPR001926 -
Trre9g05199 424 FunFam Cysteine synthase, putative 52 81 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g05199 Trre-Chr9 57132037 57137134 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g05199 45 398 Miscellaneous Gene Families AT3G04940 28.933 4.24e-35 130
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g05199 K01738 - gmx:100799081 696.041
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre9g05199 9 57132037 57137134 Trre9g05199 9 57132037 57137134 ECH