Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g05161 ATGCCAATGAAGGTTTTGGGTGGTACAAACAGTAGATACCCATTTCCTATTCTGTCAAATTGTGTTGGTTCTCTCAGTTGTAAAAGCTTTCAGGTTTCAAGTTATGGAAACAATGCCAAGTTACTTAGTGGGACTAGCTTGAAAATGAAGTGTCTTGGTAGTGATGGTAATTGTTTGCAAGATAAAAATGTTGTTTCCAATGCGAATTTGAAGTTTATAAATGAAGTTTTGGTGAAGAGAGGAATCATTTTAGCTGCTACTGTTTGTGGGGTGTTGGTGTTTGGATGTCCGAAAGTTTTCGCTGTTGAAGGTATTGTCAATGCTGGATATGGTGTTATTGGACAGAGCATACTTTTGCTTAAGAGTACTTGGCCAACGGTGTTGCAAGTTCTTCGTTTATTTAAGGAACAAGGGTTGTTATTGGCTTTGCTTTTGGGTCTTTCGGCTTTTTTCTCTTTGGCCGAGACATCAATTACCACACTTTGGCCTTGGAAGGTTCGTGAGTTGGCTGAAAAAGAATCTGAAAATGGCGTCTTCAGACTACTCCGAAGTGATGTTACTCGATTCCTCACAACCATACTTATTGGCACAACTGTAGTAAATATTGCCGCAACTGCTCTGGTCACAGAAGCTGCAACTGCAGTATTTGGCGAAGCTGGTGTTAGCGCAGCAACAGGAGTGATGACTGTTGCCATTTTGCTTCTCACCGAAATAACTCCAAAAAGCATTGCTGTTCATAATGCCACAGAGGTGGCTCGGTTTGTGGTCAGGCCAGTGGCATGGCTTTCTCTTGTACTGTATCCCGTAGGAAGAATTGTTACCTATCTTTCAATGGGGATGCTTAAATTGCTTGGCTTAAAAGGAAGTAGTGAGCCATATGTTACTGAAGAGGAGCTAAAACTGATGCTAAGGGGTGCAGAACTAAGCGGGGCAATAGAAGAGGAAGAACAGGATATGATTGAAAATGTGTTGGAGATAAAAGACACACATGTTAGAGAGGTTATGACACCTCTTGTTGATGTTGTTGCAATTGATGCAAGTGCAAGCCTTGTAGATTTTCATCACATGTGGGTCACACATCAATACTCAAGGGTACCTGTTTTTGAACAACGTGTTGATAATATAATGGGTATAGCATATGCAATGGATTTACTGGATTATGTTCAAAAGGGCGAGACGTTGGAGAGTATTACAGTTGGAGATATGGCTCACAAGCCTGCATATTTTGTACCTGATTCAATGTCTGTTTGGAATCTTCTTAGAGAGTTTCGAATCAGAAAGGTTCACATGGCTGTCGTTCTTAATGAGTATGGTGGAACTGTTGGACTCGTAACTCTTGAAGATGTTGTCGAGGAAATTGTTGGTGAAATCTTTGATGAAAATGACTCAAAGGAGGAAATACAAAAGAAAACTGGCTACATTGTGATGCGAGCTGAGGGTGTGTTTGATGTGGATGCTAACACATCCATCGATCAACTCTCTGAAGATTTGAACATCAAGATGCCAGAGGGTCATCAATATGAGACGGTATCCGGCTTTGTATGTGAAGCCTTTGGATACATTCCAAGGACAGGTGAGAGCATCAAGATAGATCTTGAAAGGGATGACGAAGATGATGAAGATGACACCAATGGCGACCACCAGGAACCGAAAGAGAAAAAACATATTTTCAAACTCGAGATTCTAGCAGGAAATGCAAGAAAGGTGAGTGCTGTTCGGTTTGAAAGGCTAAATACTGGCGACGAAACGTTGGAGGCTAAAGAAGTAACACGAATGTTCCCAAAAATTGTGAAAAGAAAATGGAACAGTGGTGAGGACTCTGAGGATGATGGAGAATATGATGGATATGCATTTGTAAAGAGACCACAAGAAGACATTTCTAATGAATATGTAGTTGATCAGGAAAATTCTCTTAGAAATTCATAA 1926 0.4071 MPMKVLGGTNSRYPFPILSNCVGSLSCKSFQVSSYGNNAKLLSGTSLKMKCLGSDGNCLQDKNVVSNANLKFINEVLVKRGIILAATVCGVLVFGCPKVFAVEGIVNAGYGVIGQSILLLKSTWPTVLQVLRLFKEQGLLLALLLGLSAFFSLAETSITTLWPWKVRELAEKESENGVFRLLRSDVTRFLTTILIGTTVVNIAATALVTEAATAVFGEAGVSAATGVMTVAILLLTEITPKSIAVHNATEVARFVVRPVAWLSLVLYPVGRIVTYLSMGMLKLLGLKGSSEPYVTEEELKLMLRGAELSGAIEEEEQDMIENVLEIKDTHVREVMTPLVDVVAIDASASLVDFHHMWVTHQYSRVPVFEQRVDNIMGIAYAMDLLDYVQKGETLESITVGDMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGLVTLEDVVEEIVGEIFDENDSKEEIQKKTGYIVMRAEGVFDVDANTSIDQLSEDLNIKMPEGHQYETVSGFVCEAFGYIPRTGESIKIDLERDDEDDEDDTNGDHQEPKEKKHIFKLEILAGNARKVSAVRFERLNTGDETLEAKEVTRMFPKIVKRKWNSGEDSEDDGEYDGYAFVKRPQEDISNEYVVDQENSLRNS 641
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g05161 641 SMART CorC_HlyC_2 475 578 IPR005170 -
Trre9g05161 641 MobiDBLite consensus disorder prediction 529 553 - -
Trre9g05161 641 Gene3D - 310 465 IPR046342 -
Trre9g05161 641 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 27 - -
Trre9g05161 641 ProSiteProfiles CBS domain profile. 335 394 IPR000644 -
Trre9g05161 641 FunFam Magnesium/cobalt efflux protein CorC 312 462 - -
Trre9g05161 641 Pfam Transporter associated domain 476 577 IPR005170 -
Trre9g05161 641 Gene3D - 472 574 IPR016169 -
Trre9g05161 641 SUPERFAMILY CBS-domain pair 318 457 IPR046342 -
Trre9g05161 641 SUPERFAMILY FAD-binding/transporter-associated domain-like 473 580 IPR036318 GO:0050660
Trre9g05161 641 PANTHER HEMOLYSIN-RELATED 132 601 - -
Trre9g05161 641 ProSiteProfiles CNNM transmembrane domain profile. 130 316 IPR002550 -
Trre9g05161 641 Pfam CBS domain 399 454 IPR000644 -
Trre9g05161 641 Pfam CBS domain 331 389 IPR000644 -
Trre9g05161 641 CDD CBS_pair_CorC_HlyC_assoc 330 451 IPR044751 -
Trre9g05161 641 Pfam Cyclin M transmembrane N-terminal domain 140 316 IPR002550 -
Trre9g05161 641 ProSiteProfiles CBS domain profile. 402 460 IPR000644 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g05161 Trre-Chr9 56922927 56928940 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g05161 - - tpra:123920331 1140.56
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre9g05161 9 56922927 56928940 Trre9g05161 9 56922927 56928940 ECH