Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g05042 ATGGCGAACGATAACGAACCTGCGAAGCTTTTGTTACCGTACCTTCAACGTGCCGATGAATTACAGAAACACGAACCTCTCGTCGCTTACTACTGTCGATTATATGCCATGGAAAGAGGATTGAAGATTCCACAAAGTGATCGCACTAAGACCACTAATTCTCTTCTTGTTTCTCTCATGAAACAGCTTGAAAAGGATAAGAAGACAACCCAGGTGGGGCCTGAAGATAATCTATATCTTGAGGGATTTGCTTTGAATGTGTTTGGAAAAGCAGACAAGCAAGATCGTGCTGGAAGAGCTGATTTGAACACAGCAAAAACATTTTACGCTGCTAGCATATTTTTTGAGATTCTTAACCAATTTGGACCTGTTCAGCCTGATCTGGAGCAAAAACAGAAATATGCAGCATGGAAAGCAGCTGATATAAGAAAGGCTTTGAAAGAAGGAAGGAAGCCCATGGCTGGCCCGCCTGCTGGTGACGACGACCTCTCAGTTCCATTGAGTTCTTCTAGTAATAGATATGATCTTGGGACTACTGAAGCTTCTGCTTCTAGTGCTGGATCTGAATCCGATTCAACACATAGTTTTCATAACCCTGTTAACTACCAGAATCTGCCTAGCATTCCTCCTGTACCTAAATTCCATGATACTCTTGATGATCAGAATTCTGCAAACGTTCCACCATCTTTGCCGTTTAATGATCGGGTAGATGATAATAAGCATTCTTCAACTGCTTCTCCATCATCTCACTCTTATACACCTGGAGGTTATCCTTCCCAAGACTTCCATCCTCCACCATCTTCCCAGGATTATCATCATCCACCACCTTCCCATGATTACCATCCTCCTGCACCTTCCCAAGATTATCATCCTCCTCCACCTTCCCACGATTACCATTCTTCCGCACCTTCCCAAGATTATCATCCCCCTCCACCTTCCCAGGATTACCATTCTCCCCCACCTTCCCAGGATTACCATTCTCCTCCACCTTCCCAAGATTATCAACCCCCTCCACCTTCCCAAGATTACCACCATCCTCCACCGGCCAGATCAGACAGTTCTTATTCTGAGCACTACAACCACCAACAGTATTCACCAGATCAGTCACAGAATTTAGGTCCAAATTACCCTTCTCATGAAACTCCCGCTCCTTACTCTCTTCCCCATTTTCAATCTTATCCAAGCTTTACAGAAAGCAGCCTGCCATCAGTACCGATAAACCATACTTATTATCAAGGGCCTGATGCTTCATATTCTTCCCAGTCAGCTCCTCTGACTACAAACCATTCATCAAGTGCCCAAAACAGTTCCAGCAGCAGAAACGGAACTGGCTCAGAACCCAAGCCAACAACTCAATCATACCAGTATGACAGTAGCTACCAGCCAGCACCTGAAAGAATAGCAGAGGCACACAAGGCTGCAAGATTTGCTGTTGGGGCACTGGCATTCGACGACGTCTCAATTGCAGTAGACTACTTGAAGAAATCACTCGAGTTGCTGACAAATCCATCAGTTGGCCAGTAA 1524 0.4501 MANDNEPAKLLLPYLQRADELQKHEPLVAYYCRLYAMERGLKIPQSDRTKTTNSLLVSLMKQLEKDKKTTQVGPEDNLYLEGFALNVFGKADKQDRAGRADLNTAKTFYAASIFFEILNQFGPVQPDLEQKQKYAAWKAADIRKALKEGRKPMAGPPAGDDDLSVPLSSSSNRYDLGTTEASASSAGSESDSTHSFHNPVNYQNLPSIPPVPKFHDTLDDQNSANVPPSLPFNDRVDDNKHSSTASPSSHSYTPGGYPSQDFHPPPSSQDYHHPPPSHDYHPPAPSQDYHPPPPSHDYHSSAPSQDYHPPPPSQDYHSPPPSQDYHSPPPSQDYQPPPPSQDYHHPPPARSDSSYSEHYNHQQYSPDQSQNLGPNYPSHETPAPYSLPHFQSYPSFTESSLPSVPINHTYYQGPDASYSSQSAPLTTNHSSSAQNSSSSRNGTGSEPKPTTQSYQYDSSYQPAPERIAEAHKAARFAVGALAFDDVSIAVDYLKKSLELLTNPSVGQ 507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g05042 507 MobiDBLite consensus disorder prediction 268 298 - -
Trre9g05042 507 Pfam Vta1 C-terminal domain 464 501 IPR041212 -
Trre9g05042 507 MobiDBLite consensus disorder prediction 242 266 - -
Trre9g05042 507 MobiDBLite consensus disorder prediction 148 390 - -
Trre9g05042 507 MobiDBLite consensus disorder prediction 353 377 - -
Trre9g05042 507 MobiDBLite consensus disorder prediction 164 204 - -
Trre9g05042 507 Gene3D - 5 152 IPR023175 -
Trre9g05042 507 Pfam Vta1 like 13 148 IPR039431 -
Trre9g05042 507 Gene3D Immunoglobulin FC, subunit C 463 502 - -
Trre9g05042 507 MobiDBLite consensus disorder prediction 405 460 - -
Trre9g05042 507 PANTHER VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN VTA1 HOMOLOG 324 503 IPR044538 GO:0032511
Trre9g05042 507 MobiDBLite consensus disorder prediction 405 465 - -
Trre9g05042 507 MobiDBLite consensus disorder prediction 305 345 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g05042 Trre-Chr9 56200057 56202948 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g05042 7 118 Glycosyltransferase AT2G31960 28.099 5.44e-09 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g05042 K12199 - gmx:100783739 774.237
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre9g05042 9 56200057 56202948 Trre9g05042 9 56200057 56202948 ECH