Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g05038 ATGCGAGATTCGAATGCGGATCATAGTTGTAGTTCACCAAGAACGCCAAATCTTCGCCAAAGAAGACGTTCAAATGAGATTCCTCCTGAAATACACAAATCGAATGGAACCATTTTACTCGCAAACGATAAATTCAAATACAAATCAATGTGGATTCGCGCATATTCATCTCTATGGATGCTAGCATTTGTCTCACTTATCATATACATGGGTCATCTTTACATTTGGGCCATGATTGTTATCATCCAAATATTTATGGCTAGTGAGCTCTTCAATCTATTGAGAAGAGCTAACCAAGATAAACGTCTCCCTAAGTTTAAGCTCTTGAATTGGCATTTTTTCTTCACGGCGATGCTATATGTTTATGGCCGTATTCTCAGTCAACACCTTGTGAATACAGTGACATCGGAGAAAATTTTCTATAGACTCGTCAGTAACCTCATCAAATATCAGATGGTTATATGTTACTTCCTATATATTGCAGGTTTTGTATGGTTTATTCTTTCGTTAAAGAAGAGATACTACAAATATCAATTTGGCCAGTATGCATGGACACATATGATACTTATTATTGTGTTTACGCAATCTGCATTCACGGTGGCTAATATATTTCAAGGAATTTTCTGGTTTCTTTTCCCTGCATCGCTTATTGCTATGAATGATGTTGCTGCGTATTTCTTCGGTTTCTTCTTTGGAAAAACACCTCTGATTAAGTTATCTCCAAAGAAAACATGGGAAGGTTTTATCGGAGCATCTGTTGCAACTATGATCGCTGCATTTACGTTCGCAAACTTTCTAGGTCGCTTCCAGTGGCTAACATGTCCAAGGAAGGATTTATCAACAGGTTGGCTTGAGTGTGACCCTGACCCCATTTTTAAGCCAGAGTACATTCCAATGCCAGAATTTATTTCTCATTGGATACCTGATAAAGAGATAGCAGTTTTGCCAGTACAATGGCATGCTTTGTGGCTAGGACTATTTGCGTCCATCATAGCACCATTTGGAGGTTTTTTTGCCAGCGGTTTCAAAAGAGCTTTTAAAATCAAGGACTTTGGTGACAGTATACCTGGACATGGTGGATTCACTGACAGAATGGACTGCCAGATGGTGATGGCTGTTTTTGTTTACATTTACCATCAGTCATTTGTTGTCCAACATGACTATTCCATTGATGTGCTTTTGGACCAGATAATGAGGGACCTTGGTTTTGAGGAGCAGCTAGCTCTTTACACAAAACTTGGGCAGATATTACAAGAAAGGCAATTAATGCATATATGA 1278 0.3865 MRDSNADHSCSSPRTPNLRQRRRSNEIPPEIHKSNGTILLANDKFKYKSMWIRAYSSLWMLAFVSLIIYMGHLYIWAMIVIIQIFMASELFNLLRRANQDKRLPKFKLLNWHFFFTAMLYVYGRILSQHLVNTVTSEKIFYRLVSNLIKYQMVICYFLYIAGFVWFILSLKKRYYKYQFGQYAWTHMILIIVFTQSAFTVANIFQGIFWFLFPASLIAMNDVAAYFFGFFFGKTPLIKLSPKKTWEGFIGASVATMIAAFTFANFLGRFQWLTCPRKDLSTGWLECDPDPIFKPEYIPMPEFISHWIPDKEIAVLPVQWHALWLGLFASIIAPFGGFFASGFKRAFKIKDFGDSIPGHGGFTDRMDCQMVMAVFVYIYHQSFVVQHDYSIDVLLDQIMRDLGFEEQLALYTKLGQILQERQLMHI 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g05038 425 PIRSF CDP-DAG_synth_e 2 425 IPR016720 GO:0004605
Trre9g05038 425 PANTHER PHOSPHATIDATE CYTIDYLYLTRANSFERASE 17 422 IPR016720 GO:0004605
Trre9g05038 425 MobiDBLite consensus disorder prediction 1 30 - -
Trre9g05038 425 Pfam Cytidylyltransferase family 52 382 - -
Trre9g05038 425 ProSitePatterns Phosphatidate cytidylyltransferase signature. 340 366 IPR000374 GO:0016020|GO:0016772
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g05038 Trre-Chr9 56174246 56176700 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g05038 2 420 Lipid Metabolism Gene Families AT4G26770 73.934 0.0 638
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g05038 K00981 - gmx:100805363 772.696
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre9g05038 9 56174246 56176700 Trre9g05038 9 56174246 56176700 ECH