Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g04983 ATGGAGGACATGGATGATGAAATCGATGACGTTCCTCAGGTTTACATGGCCTGCATACAAAATGGTCATAGAATTGGAGTTTCTTATTATGATTCCAGCCTCCGACAACTAAATGTGCTTGAAGCTTGGGATGATGGGGACAAAGGTTTTTCGATTATTGATCTTGTGAAATATCAAGCAAACCCTCTGGTCATATACACAAGCACTAAATGTGAAGAATCTTTCTTGGCTGCTCTACAACGAAGTGATGAAGTAGCTGAGGCTCTTACAGTAAAGCTTGTGAAAAGTTCAATATTCAGCTATGAGCAAGCGTGGCACAGATTAATTTACCTTCGAGTGGCGGGAATGGATGATGGATTAGACGTCAAGGAGAGGATTTACTTTTTGAGTTCCATGATGGACATGGGAAGTGAAGTACAAGTTCGTGCTAGTGGTGGCCTTCTTGCAATATTAGAGAATGAAAGGATTGTAGACACTCTTGAGCAAAAAGAATCTGGAAATACATCAATTACAATAGATTCTTTAGCAGAAATTTCACTAAATAACTTTATCAAACTTGATGCAGCAGCTCATGAAGCATTACAAATATTCCAGATAGACAAGCACCCAAGCCACATGGGAATTGGTAGAGCAAAAGAAGGGTTTTCTGTATTTGGAATGATGAATAAGTGTGTCACTCCAATGGGTAGACGTCTTTTGAGACAGTGGTTCTTGAGGCCCATACTTGATCTTGAAGTTCTAAACTACCGCTTAAATTCTATATCTTTCTTTCAATGTTCAGAAGAACTTGTTGCTTCTTTACGCGAAACCCTGAAATCTGTGAAAGACATACCCCACTTGCTTAAGAAATTTGACTCTCCAAGCTCCATATGCACTAGCAATGATTGGGCAGCACTTCTGAAGAGCATCAGTGCACTATTGCATGTAAACAAGATATTTGAAGTTGGAATTTCCGAAGGCCTCCAAGAAGAATTGAAGTACTTGAACTTGGATATTGTTGAGACGGCAAATTCATGCATAACAACGGAGCTTGCTTATGTCTATGAGCTGATAATTGGGGTTATTGATGTAAACAGAAGTAAAGAGAAGGGTTATACGACGGTGGTGAAAGAAGGTTTCTGTGATGAGTTGGATGAGCTAAGGCAAATATATGAGGAACTGCCAGAATTCCTGGAAGAGGTTTCATCATTGGAGCTTGCACAACTCCCTGATCTATGCAAGGACAAGCTTGTTCCCTGTATTGTTTATATACAGCAAATAGGATATTTGATGTGCATCTTTGAAGAAAAACTTGAAGAAGCTACTCTGGAGAAACTTATAGAATGGGAATACACTTTTTGTGATGAAGATGGCGAGACGAAAAGATATTTTTATCGTACGCCAAAGACACGAGAATTGGACAATCTTCTAGGAGATATCTATCATAAAATTCTAGATATGGAGAGGGCAATCACTAGAGACTTGTTTTCACATGTATCATTGTTCTCAACCCATTTGATAAAGGTTTCAACTTTTGCGGCTGAACTGGACTGCTTTTTGTCAATGGCTTTGGTTGCTCGACAGAACAATTATGTCAGACCTTTATTGACCAAAGAAAACATGCTCGATATAAAAAATGGAAGGCATGTTTTACAGGAAATGACTGTAGACACATTTATTCCTAACGATACTAAGATTTTTCATGATGGAAGAGTTAATATCATCACTGGTCCTAACTTTTCTGGGAAGAGTATCTATATAAAACAGGTGGCAGTAATTGTTTTCCTGTCCCACATCGGTAGTTTTGTACCAGCTGATGCAGCAACTGTTGGGCTGACAGATAGAATATTTTGTGCGATGGGAAGCAGGCTTATGACAGCAGAACAATCAACATTTATGATTGATCTACATCAAATTGGGATGATGCTGAGGCATGCTACTTCACGATCTCTGTGTCTGGTGGATGAATTTGGTAAAGGTACTCTTACAGAAGACGGCATTGGTCTGCTTGCCGGGGCCATAAATCACTTTATCACATGTGATGAACCTCCAAAGGTTTTCGTGTGCACTCATCTGATGGATTTATTGCATGGGTGTTCTTTGACCAAGTCTGAGCAGATTAAGTTCTACACGATGAGTATACTGAGGCCTGAAGACAATTCAACTCAAATGGAAGACATCGTATTTTTATATAGACTTGTCCCAGGGCATGTGCATCATAGCTATGGGCTGCACTGTGCATTGCTTGCAGGCGTGCCAGACGAAATTATAAAAAGAGCAGCAGTTGTGTTGGATGCTGTTTCAAAAAACAATTGTGTTGAGAGGTTATGCAATGAGAACATCTCCGCTCAAGATGACGAATACAAGGATGCCATGGAGAAATTGTTGGAATTTGATATTGAAAATGGAGACTTAAACCTTTTTTTCGAGGAGATATTCTCTAGTTCCTAA 2430 0.3947 MEDMDDEIDDVPQVYMACIQNGHRIGVSYYDSSLRQLNVLEAWDDGDKGFSIIDLVKYQANPLVIYTSTKCEESFLAALQRSDEVAEALTVKLVKSSIFSYEQAWHRLIYLRVAGMDDGLDVKERIYFLSSMMDMGSEVQVRASGGLLAILENERIVDTLEQKESGNTSITIDSLAEISLNNFIKLDAAAHEALQIFQIDKHPSHMGIGRAKEGFSVFGMMNKCVTPMGRRLLRQWFLRPILDLEVLNYRLNSISFFQCSEELVASLRETLKSVKDIPHLLKKFDSPSSICTSNDWAALLKSISALLHVNKIFEVGISEGLQEELKYLNLDIVETANSCITTELAYVYELIIGVIDVNRSKEKGYTTVVKEGFCDELDELRQIYEELPEFLEEVSSLELAQLPDLCKDKLVPCIVYIQQIGYLMCIFEEKLEEATLEKLIEWEYTFCDEDGETKRYFYRTPKTRELDNLLGDIYHKILDMERAITRDLFSHVSLFSTHLIKVSTFAAELDCFLSMALVARQNNYVRPLLTKENMLDIKNGRHVLQEMTVDTFIPNDTKIFHDGRVNIITGPNFSGKSIYIKQVAVIVFLSHIGSFVPADAATVGLTDRIFCAMGSRLMTAEQSTFMIDLHQIGMMLRHATSRSLCLVDEFGKGTLTEDGIGLLAGAINHFITCDEPPKVFVCTHLMDLLHGCSLTKSEQIKFYTMSILRPEDNSTQMEDIVFLYRLVPGHVHHSYGLHCALLAGVPDEIIKRAAVVLDAVSKNNCVERLCNENISAQDDEYKDAMEKLLEFDIENGDLNLFFEEIFSSS 809
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g04983 809 Pfam MutS domain V 567 758 IPR000432 GO:0005524|GO:0006298|GO:0030983
Trre9g04983 809 SMART mutATP5 563 758 IPR000432 GO:0005524|GO:0006298|GO:0030983
Trre9g04983 809 FunFam DNA mismatch repair protein MSH5 184 410 - -
Trre9g04983 809 Gene3D - 524 795 IPR027417 -
Trre9g04983 809 PANTHER DNA MISMATCH REPAIR PROTEIN MUTS FAMILY MEMBER 80 774 IPR045076 GO:0005524|GO:0006298|GO:0030983|GO:0140664
Trre9g04983 809 Pfam MutS family domain IV 372 473 IPR007861 GO:0005524|GO:0006298|GO:0030983
Trre9g04983 809 PIRSF MSH2 2 799 IPR011184 GO:0005524|GO:0006298|GO:0030983
Trre9g04983 809 SUPERFAMILY DNA repair protein MutS, domain III 187 523 IPR036187 -
Trre9g04983 809 CDD ABC_MSH5_euk 536 745 - -
Trre9g04983 809 FunFam DNA mismatch repair protein MSH5 525 791 - -
Trre9g04983 809 Pfam MutS domain III 191 516 IPR007696 GO:0005524|GO:0006298|GO:0030983
Trre9g04983 809 ProSitePatterns DNA mismatch repair proteins mutS family signature. 643 659 IPR000432 GO:0005524|GO:0006298|GO:0030983
Trre9g04983 809 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 524 760 IPR027417 -
Trre9g04983 809 SMART DNAend 212 548 IPR007696 GO:0005524|GO:0006298|GO:0030983
Trre9g04983 809 Gene3D - 185 408 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g04983 Trre-Chr9 55780268 55793839 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g04983 K08741 - gmx:100797567 1431.39
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre9g04983 9 55780268 55793839 Trre9g04983 9 55780268 55793839 ECH