Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g04432 ATGGGAGATCAATTAGCAAGAGCAGAAGATTTTGAGAATAAGGCAGAGAAAAAATTGAGTAGTTGGGGCATGTTTGGTTCCAAATTTGAGGATGCTGCTGATCTATTTGATAAATCTGCAAATCATTATAAGCTCGCCAAATCATGGGATAAAGCAGGAGCAACCTACATTAAGTTAGCAAATTGCCATTTGAAGTTGGAAAGCAAGCATGAAGCTGCCTCAGCTTATGTTGATGCTGCACATTGCTATAAAAAAATCAACATGAATGAGGCTATATCTTGCTTAGATAATGCTGTAAATAATTTCTGTGAAATTGGAAGAATTTCTATGGCTGCTCGATATTTGAAGGAAATCGCTGAATTATGCGAGTCTGAACAAAATATCGAGAAGGCCCTTGTTTATTATGAAAAATCGGCCGATTTATATGAAAGCGAGGAAGTGACAACATCTGCAAACCAATGCAAGCAAAAAGTTGCTCAATTTTCTGCTCAGCTAGAACAATATCAGAAATCAATCGAAATTTATGAAGACATAGCTCGTCAATCTCTCAGCAATAATTTGTTGAAATATGGAGTTAAAGGACATCTTCTTAATGCTGGGATTTGCCAACTTTGTAAAGGGGATGTTGTTGCGATTACCAATGCATTAGAGCGATATCAGGATTTGGATCCAACATTTTCAGGAACACGTGAATATAAACTTTTGGCGGACGTCGCTGCTGCAATTGATGAAGAAGATGTTGCAAAGTTTACTGAAGCTGTCAAGGAGTTTGATAGCATGACTCCTTTGGATTCTTGGAGAACAACACTTTTTCTTAGGGTGAAGGAACAAATAAAAGCCAAAGAACTTGAGGAGGATGATCTTACATAA 870 0.3736 MGDQLARAEDFENKAEKKLSSWGMFGSKFEDAADLFDKSANHYKLAKSWDKAGATYIKLANCHLKLESKHEAASAYVDAAHCYKKINMNEAISCLDNAVNNFCEIGRISMAARYLKEIAELCESEQNIEKALVYYEKSADLYESEEVTTSANQCKQKVAQFSAQLEQYQKSIEIYEDIARQSLSNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDLDPTFSGTREYKLLADVAAAIDEEDVAKFTEAVKEFDSMTPLDSWRTTLFLRVKEQIKAKELEEDDLT 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g04432 289 SUPERFAMILY TPR-like 7 281 IPR011990 GO:0005515
Trre9g04432 289 Pfam Soluble NSF attachment protein, SNAP 7 279 - -
Trre9g04432 289 PRINTS NSF attachment protein signature 91 108 IPR000744 GO:0006886
Trre9g04432 289 PRINTS NSF attachment protein signature 152 175 IPR000744 GO:0006886
Trre9g04432 289 PRINTS NSF attachment protein signature 119 136 IPR000744 GO:0006886
Trre9g04432 289 PRINTS NSF attachment protein signature 255 275 IPR000744 GO:0006886
Trre9g04432 289 PRINTS NSF attachment protein signature 28 47 IPR000744 GO:0006886
Trre9g04432 289 PRINTS NSF attachment protein signature 224 244 IPR000744 GO:0006886
Trre9g04432 289 PRINTS NSF attachment protein signature 183 202 IPR000744 GO:0006886
Trre9g04432 289 Gene3D Tetratricopeptide repeat domain 6 288 IPR011990 GO:0005515
Trre9g04432 289 FunFam Alpha-soluble NSF attachment protein-like 6 285 - -
Trre9g04432 289 CDD SNAP 7 278 IPR000744 GO:0006886
Trre9g04432 289 PANTHER SOLUBLE NSF ATTACHMENT PROTEIN SNAP 8 279 IPR000744 GO:0006886
Trre9g04432 289 Coils Coil 151 178 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g04432 Trre-Chr9 51957007 51959674 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g04432 K15296 - gmx:100794564 507.679
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g02157 5 16194671 16199137 Trre9g04432 9 51957007 51959674 ECH
Trre9g04432 9 51957007 51959674 Trre9g04432 9 51957007 51959674 ECH
Trre5g02157 5 16194671 16199137 Trre9g04432 9 51957007 51959674 PCT