Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g03990 ATGGAAAAACTCAAACCAAGTCAACCCAACAATTCTCCTCTCACACCACTCACCTTCTTAGAAAGAGCCTCCACAATTTACTCTGATATCCCCTCCATCATCTACAACGACACCGTTTTCACATGGTCTCAAACCCACAACCGATGTCTTAAACTCGCTTCATCAATCATCTCCCTCGGAATCCGCCGTGGAAACGTTGTCTCCGTCGTTGCCCCCAACATCCCCGCCATGTATGAACTCCACTTCGCCGTCCCTTTCACCGGTGCAATCCTCAACAACATCAACACGCGCCTCGACGCGCGTATTATATCCAATATCCTCACTCACTCCGAATCTAAACTTGTTTTCGTAGATTGCTCCGCACGTGATCTCGTTCTCCAAGCTTTATCGTTATTTCCATCTAAACAACCAAAACCTCTCCTTATTCTCATCAACGACGAATCATTGGAAACAAACGAAAATGTTTCTTCATCTTCCACCGTTGATTTTATCTCAACTTACGAAGATCTAATTCAAAACGGTGATCCAAATTTTAAATGGATATATCCAGATTCCGAGTGGGACCCGATGTTACTTAACTACACTTCTGGAACGACGTCGTCTCCAAAAGGTGCAGTTCATTCACATAGGGGAACATTCATCGTGACCGTTGATTCGTTAATCGAATGGTCAGTTCCAAAACAACCGATTTTTCTCTGGACACTTCCTATGTTCCATGCTAACGGGTGGAGCTTCCCGTGGGGAATCGCAGCCGTTGGTGGAACAAATATTTGTGTAAGAAAATTCGACGCGGAAATTGTTTACTCTTTAATCAAAAAGCATCACGTGACACACATGTGCGGTGCTCCAGTAGTTCTCAATATGCTAACAAATTCTCCTGACAACAAACCGTTACAAAAAACGGTTAACATTTTAACCGCCGGAGCACCGCCTCCTGCCGCCGTTCTTTTCCGTACGGAGTCGTTGGGTTTTACGAATGGTTGGTTTTACACTGGCGATGTTGGTGTGATGCATGAAGATGGGTATTTAGAGATTAAGGATAGATCGAAGGATGTGATTATTAGTGGTGGTGAGAATTTGAGTAGTGTGGAGGTTGAATCGGTTTTATATGGACATTCGGCGGTGAATGAGGCGGCGGTGGTGGCAAGAGCGGACGAGTTTTGGGGGGAGACGCCGTGTGCGTTTGTGAGTTTGAAAGATGGTTTGAAAGAAAAAGATATACCGACGGAGAAAGAGATTGTTGAATACTGTAGGAAGAATTTACCGCATTATATGGTTCCAAAAACGGTTGTTTTTAAAGATGAGCTTCCTAAGACATCTACCGGGAAAATTCAGAAGTTTGTTCTTAGACAGATTGCTAAGGATATGGGACCAATTAGAAAAAGTCGAATTGTGAAACTGCATGCTGTTACAACAGCAGGCAAAGATGGCGTTGTAATTGGGTTGGAGGGAAGGATTGTACAAAATGATAAGTGA 1476 0.4377 MEKLKPSQPNNSPLTPLTFLERASTIYSDIPSIIYNDTVFTWSQTHNRCLKLASSIISLGIRRGNVVSVVAPNIPAMYELHFAVPFTGAILNNINTRLDARIISNILTHSESKLVFVDCSARDLVLQALSLFPSKQPKPLLILINDESLETNENVSSSSTVDFISTYEDLIQNGDPNFKWIYPDSEWDPMLLNYTSGTTSSPKGAVHSHRGTFIVTVDSLIEWSVPKQPIFLWTLPMFHANGWSFPWGIAAVGGTNICVRKFDAEIVYSLIKKHHVTHMCGAPVVLNMLTNSPDNKPLQKTVNILTAGAPPPAAVLFRTESLGFTNGWFYTGDVGVMHEDGYLEIKDRSKDVIISGGENLSSVEVESVLYGHSAVNEAAVVARADEFWGETPCAFVSLKDGLKEKDIPTEKEIVEYCRKNLPHYMVPKTVVFKDELPKTSTGKIQKFVLRQIAKDMGPIRKSRIVKLHAVTTAGKDGVVIGLEGRIVQNDK 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g03990 491 Pfam AMP-binding enzyme 22 318 IPR000873 -
Trre9g03990 491 Pfam AMP-binding enzyme 325 355 IPR000873 -
Trre9g03990 491 Gene3D - 2 321 IPR042099 -
Trre9g03990 491 SUPERFAMILY Acetyl-CoA synthetase-like 9 456 - -
Trre9g03990 491 Gene3D - 355 473 IPR045851 -
Trre9g03990 491 FunFam 2,3-dihydroxybenzoate-AMP ligase 350 457 - -
Trre9g03990 491 Gene3D - 322 354 IPR042099 -
Trre9g03990 491 ProSitePatterns Putative AMP-binding domain signature. 192 203 IPR020845 -
Trre9g03990 491 PANTHER ACYL-ACTIVATING ENZYME 1 325 - -
Trre9g03990 491 Pfam AMP-binding enzyme C-terminal domain 364 443 IPR025110 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g03990 Trre-Chr9 48009144 48011160 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g03990 326 456 EF-hand Containing Proteins AT1G21540 67.939 1.80e-56 195
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g03990 - - tpra:123921915 614.379
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre9g03990 9 48009144 48011160 Trre9g03990 9 48009144 48011160 ECH