Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g03558 ATGGCTGTTTCAACTAGTTTCTATGGTGCAAAATTGGAACCTTTGTTCATCAAATATTGTTCTTCTTCATCATCATTATCTTATGTTACTACTCATTTATCATTCTTAGGTAGAAATAGAAAGAGTTTTGATCAGTGTCAAAGAGGTTCAATTATTCGATGTGAGGCTTCTTCTTCTGATAATGCTAATTCTGTTTCTGCTCTACAACAGCTTAAAACTTCTGCAGCTGATAGATACACAAAGGAAAAGAGCAGCATTGTGGTAATTGGACTAAGTGTGCATACTACGCCAGTCGAAATGCGTGAGAAACTTGCCATACCAGAAGCAGAATGGCCTAGAGCCATTGGTGAGCTTTGTAATCTGAATCATATTGAAGAAGCAGCTGTTCTTAGCACATGCAACAGAATGGAGATATATGTTGTTGCACTTTCTCAGCACCGCGGCGTCAAAGAAGTCACTGAATGGATGTCAAGTACAAGTGGTATACCTGCATCTGAGCTTTCAAAGTACCTATTTTTGCTATACAACAAAGATGCAACACATCACATTTTTGAAGTATCAGCAGGACTTGATTCTCTTGTAATGGGAGAAGGTCAAATCCTTGCACAAGTTAAGCAAGTTGTGAAAGCAGGACAAGGAGTTAATGGCTTTGGAAGAAACATCAGTGGTCTATTCAAGCACGCAATCACTGTCGGCAAAAGGGTCCGAACCGAGACCAACATTGCGGCCGGTGCAGTTTCCGTGAGTTCGGCTGCAGTTGAATTGGCCTTGATGAAGTTACCTGATCAAGCCTCACATGGCAATTCAAGAATGCTAGTTATTGGAGCTGGAAAAATGGGGAAGCTTGTGATTAAGCATTTAGTTGCAAAAGGGTGTAAAAAGATGGTAGTTGTTAATCGAACCGAAGAGAGAGTCGCAGCGATCCGCGAAGAAATAAGTGATGTTGAGATAATCTACAAACCGCTTTCGGAAATGTTCGAATGTGTCGGCGAAGCAGATGTGGTTTTCACCAGCACTGCATCAGAGAATCCTTTGATTTTAAAAGAACATGTTAAGGAACTTCCTTTAGCAAGCGAAGAAGTCGGACGAAAACGCCTCTTTGTCGACATTTCTGTTCCGAGAAACGTCGGTTCATGTGTCAATGACCTTGAGTCGGTCAAAGTTTACAATGTTGATGATCTTAAAGAAGTTGTGGCTGCTAACAAAGAAGATAGGTTAAGAAAAGCAATGGAAGCACAAGTGATAATCGACGAAGAATCAAGACAATTCGAAGCATGGAGAGACTCATTAGAAACTGTTCCTACCATTAAAAAATTAAGGGCTTATGCTGAAAGATTAAGGGTAGCTGAGTTTGAGAAATGTTTAGGCAAAATGGGTGATGATATCAATAAGAAAACACAAAAAGCTGTGGATGATCTTAGTAAAGGGATTGTGAATAAAATGCTTCATGGTCCAATGCAACATTTGAGATGTGATGGAAGTGATAGTAGAACTTTGAGTGAGACACTTGAAAATATGCATGCTTTGAATAGAATGTTTAGTCTTGAAACTGAGATTTCTATTTTGGAACAGAAGATTAAAGCTAAGGTGGAGCAAAAACCATAG 1605 0.3956 MAVSTSFYGAKLEPLFIKYCSSSSSLSYVTTHLSFLGRNRKSFDQCQRGSIIRCEASSSDNANSVSALQQLKTSAADRYTKEKSSIVVIGLSVHTTPVEMREKLAIPEAEWPRAIGELCNLNHIEEAAVLSTCNRMEIYVVALSQHRGVKEVTEWMSSTSGIPASELSKYLFLLYNKDATHHIFEVSAGLDSLVMGEGQILAQVKQVVKAGQGVNGFGRNISGLFKHAITVGKRVRTETNIAAGAVSVSSAAVELALMKLPDQASHGNSRMLVIGAGKMGKLVIKHLVAKGCKKMVVVNRTEERVAAIREEISDVEIIYKPLSEMFECVGEADVVFTSTASENPLILKEHVKELPLASEEVGRKRLFVDISVPRNVGSCVNDLESVKVYNVDDLKEVVAANKEDRLRKAMEAQVIIDEESRQFEAWRDSLETVPTIKKLRAYAERLRVAEFEKCLGKMGDDINKKTQKAVDDLSKGIVNKMLHGPMQHLRCDGSDSRTLSETLENMHALNRMFSLETEISILEQKIKAKVEQKP 534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g03558 534 Gene3D - 84 244 IPR036343 GO:0008883|GO:0033014|GO:0050661
Trre9g03558 534 Coils Coil 298 318 - -
Trre9g03558 534 Gene3D - 245 398 - -
Trre9g03558 534 SUPERFAMILY Glutamyl tRNA-reductase catalytic, N-terminal domain 85 241 IPR036343 GO:0008883|GO:0033014|GO:0050661
Trre9g03558 534 SUPERFAMILY Glutamyl tRNA-reductase dimerization domain 409 495 IPR036453 GO:0008883|GO:0033014|GO:0050661
Trre9g03558 534 ProSitePatterns Glutamyl-tRNA reductase signature. 182 205 IPR018214 GO:0008883
Trre9g03558 534 Hamap Glutamyl-tRNA reductase [hemA]. 85 513 IPR000343 GO:0008883|GO:0033014|GO:0050661
Trre9g03558 534 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 244 405 IPR036291 -
Trre9g03558 534 NCBIfam glutamyl-tRNA reductase 86 495 IPR000343 GO:0008883|GO:0033014|GO:0050661
Trre9g03558 534 CDD NAD_bind_Glutamyl_tRNA_reduct 86 409 - -
Trre9g03558 534 Pfam Glutamyl-tRNAGlu reductase, dimerisation domain 411 515 IPR015896 GO:0008883|GO:0033014|GO:0050661
Trre9g03558 534 FunFam Glutamyl-tRNA reductase 85 244 - -
Trre9g03558 534 FunFam Glutamyl-tRNA reductase 244 404 - -
Trre9g03558 534 Pfam Glutamyl-tRNAGlu reductase, N-terminal domain 89 239 IPR015895 GO:0008883|GO:0033014|GO:0050661
Trre9g03558 534 PANTHER GLUTAMYL-TRNA REDUCTASE 1, CHLOROPLASTIC 4 532 - -
Trre9g03558 534 Pfam Shikimate / quinate 5-dehydrogenase 256 397 IPR006151 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g03558 Trre-Chr9 44297447 44300242 Dispersed/Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g03558 K02492 - gmx:100815985 840.106
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre9g03558 9 44297447 44300242 Trre9g03558 9 44297447 44300242 ECH