Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g03537 ATGGCCATGGCTCTTCGCAGACTCACTTCCTCCATCAACAAACAAACTTCACCTCTCACCACCACCTCTTCTCTTTATCGCATGTCATCATCTTCTCTCTCCCCACAACAGAAGAATCACAAATCTCATCCCGATTGGATTAAACAGCTCAACGATCCTCTTGAAGTGGTGGATCCTGAGATCGAAGATATAATCGAGCTCGAAAAAGCTCGTCAATGGAAGGGACTAGAACTTATACCCTCAGAAAATTTTACGTCGTTGTCGGTGATGCAAGCGGTTGGATCGGTTATGACGAATAAATACAGTGAAGGTTATCCTGGTGCTAGATACTATGGTGGAAATGAGTACATTGACATGGCTGAGACCTTGTGTCAGAAGCGTGCATTGGAAGCTTTTGGGTTGGATCCAGCAAAATGGGGAGTCAATGTGCAGTCATTATCTGGATCCCCTTCTAACTTCCAAGTTTACACTGCTTTATTGAAACCTCATGAGAGAATTATGGCACTCGATCTTCCCCATGGTGGGCATCTATCACATGGATATCAGACTGACACCAAGAAGATATCAGCTGTATCTATATTCTTTGAAACAATGCCATACAGATTGGACGAGAGCACTGGTTATATTGATTATGACCAGATGGAGAAAAGTGCTGCACTTTTTAGGCCAAAATTAATAGTTGCTGGTGCTAGTGCTTATGCCCGTCTTTATGATTATGCACGCATTCGCAAGGTCTGTGATAAACAAAAGGCAGTTATGTTGGCTGATATGGCACACATCAGTGGATTAGTTGCTGCAGGTGTTATTCCTTCTCCTTTTGATTACGCTGATGTTGTAACAACCACAACACACAAGTCACTTCGTGGGCCACGCGGGGCTATGATATTCTTTAGGAAGGGTGTGAAAGAGATAAACAAGAAAGGGCAGGAGGTGTTGTATGACTATGAAGACAAAATAAATCAGGCTGTTTTTCCTGGACTTCAAGGTGGTCCCCACAATCACACTATTACAGGCTTAGCAGTTGCATTGAAGCAGGCTATGACACCAGAATTCAAGAATTATCAAAAACAAGTTCTGAGTAACTCCTCAACATTTGCACAGAGTTTGTTAGAGAAAGGCTATGACCTTGTATCTGGTGGAACTGAGAACCATTTGGTGTTGGTGAACCTAAGAAACAAGGGAATTGATGGCTCAAGGGTTGAAAAGGTGTTAGAATCAGTCCATATAGCTGCCAATAAAAATACTGTTCCAGGGGATGTGTCTGCTATGGTTCCTGGGGGCATCAGAATGGGAACACCTGCTCTCACATCAAGGGGATTTATTGAGGGCGATTTTAAAAAAGTTGCTGAATACTTTGATGTGGCAGTCAAAATAGCCTTACAGATAAAGGGAAATTCTAAAGGTACAAAGTTGAAGGATTTTGTGGAAGCTATGCAGTCAGATGAACAAATTCAATCTCAAATTGTTAATCTCCGCTCTGAAGTAGAAGATTATGCTAAACAGTTTCCCACAATCGGTTTTGAGAAAGAAACAATGAAGTATAATAAGTGA 1551 0.4184 MAMALRRLTSSINKQTSPLTTTSSLYRMSSSSLSPQQKNHKSHPDWIKQLNDPLEVVDPEIEDIIELEKARQWKGLELIPSENFTSLSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAETLCQKRALEAFGLDPAKWGVNVQSLSGSPSNFQVYTALLKPHERIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLDESTGYIDYDQMEKSAALFRPKLIVAGASAYARLYDYARIRKVCDKQKAVMLADMAHISGLVAAGVIPSPFDYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKKGQEVLYDYEDKINQAVFPGLQGGPHNHTITGLAVALKQAMTPEFKNYQKQVLSNSSTFAQSLLEKGYDLVSGGTENHLVLVNLRNKGIDGSRVEKVLESVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFIEGDFKKVAEYFDVAVKIALQIKGNSKGTKLKDFVEAMQSDEQIQSQIVNLRSEVEDYAKQFPTIGFEKETMKYNK 516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g03537 516 Gene3D - 83 356 IPR015421 GO:0003824
Trre9g03537 516 Gene3D Aspartate Aminotransferase, domain 1 58 503 IPR015422 GO:0003824
Trre9g03537 516 MobiDBLite consensus disorder prediction 19 44 - -
Trre9g03537 516 Pfam Serine hydroxymethyltransferase 54 451 IPR039429 -
Trre9g03537 516 PANTHER SERINE HYDROXYMETHYLTRANSFERASE 41 509 IPR001085 GO:0004372|GO:0019264|GO:0030170|GO:0035999
Trre9g03537 516 PIRSF SHMT 35 511 IPR001085 GO:0004372|GO:0019264|GO:0030170|GO:0035999
Trre9g03537 516 Coils Coil 481 501 - -
Trre9g03537 516 FunFam Serine hydroxymethyltransferase 83 356 - -
Trre9g03537 516 MobiDBLite consensus disorder prediction 19 40 - -
Trre9g03537 516 CDD SHMT 57 478 IPR001085 GO:0004372|GO:0019264|GO:0030170|GO:0035999
Trre9g03537 516 ProSitePatterns Serine hydroxymethyltransferase pyridoxal-phosphate attachment site. 277 293 IPR019798 GO:0030170
Trre9g03537 516 SUPERFAMILY PLP-dependent transferases 39 507 IPR015424 -
Trre9g03537 516 Hamap Serine hydroxymethyltransferase [glyA]. 53 506 IPR001085 GO:0004372|GO:0019264|GO:0030170|GO:0035999
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g03537 Trre-Chr9 44130024 44136864 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g03537 K00600 - gmx:100816213 909.827
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre9g03537 9 44130024 44136864 Trre9g03537 9 44130024 44136864 ECH