Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g03522 ATGGATTTTGATACTCTTCTTCACACAATCTTTGCAAAATCACTCACTGTCCTTTCCTGGCCTCCAATTATTTTGCTTTTTCCTTTATACGTTTCTATTCGAGCATTGGAGAGTGATTGTCGTAGCAGTAATCAACAATGTCTTGCTTTTTGGGTTCTGTTTGCTTTCTCTATGATCATCGAATATGAACTTCAAATTTTACTTAGCTGGCTTCCATGGTGGCCTCATGTGAAAGCCATGGCAACTATCCTGCTGCTAATACCTTATTTTGGTGCTGCGACGTACATCTACAAGTTCTTAATTAAGCATTACTGTTCGTGGAACATATGTGGATGGACGTTGAACATCTTCCACCAGAAAATCACACATTTTGATTTGGGCAACGATAGCAAAATACTTTCAGAGTTGGATGAGGGCCGAAAAGTATTTTTGGAATCGGACGATGATAGCAAAAATGTTGACGTCTCTGGACAGTCAATTATTACAAATCATTTACAAGAGGAGAAACTCTTGGTATATCAGGGAAAAGACGAGCTTGCTGATTGTGACAAGACAAATACCGGATATACAAGTAAAAAGAAAGTCCAGAAGGAATGGAGTTGTGCTTTATGTCAAATTAGTACTACAAGTGAAAATTGCTTAGGGTCACATCTTCAAGGGAAGCAACACAAGGCTAAGGAAAAAGAACTTCGAGTTGGGTTACATGCAACAAATATACCGTATGTTGTATCCTTTTCGCAGGAAAGAATCAAAGGAATGGTTCTACTTAGGAATTTCAACCAAATTGCAAAGATACTGAGGCCAGTTTCTAGACCTACAATATGGTGTGAATGGAAAAAGCCGGAATTAGGATGGACAAAACTAAATACTGACGGTTCCATAAACAAAGTAACTGCTGGTTTTGGTGGTCTGCTTCGTGATTACCGGGGGGAACCAATATGCGCGTTTGTCTCCAAAGCTCCACAAGGAGATATTTTCTTGGTTGAACTTTGGGCTATATGGAGAGGCCTTGTTCTCTCCATAGGTCTTGGGATTAAATCAATATGGGTTGAGTCAGATTCCATGAGTGTTGTGAACACAATCAATAAAGTGCAACATTGTCCGAAAGCTGAAACCTGTTTGATACAAATCTGGAAACTCTTGAGTAAGTTTGATGACTATCGGATTTCTCACTCGTGGCGCGAAACTAATAGAGCAGCAGATCATCTTGCAAAGATGGCTCTTTGTGGAAATGATGTGGTTCTATGGCCAGCTGATTTTTCACATAGCCTCTGCAATATCATTCAAGATGATGCCAGAGGAACGAAATATCCAAGACGGTGA 1323 0.3983 MDFDTLLHTIFAKSLTVLSWPPIILLFPLYVSIRALESDCRSSNQQCLAFWVLFAFSMIIEYELQILLSWLPWWPHVKAMATILLLIPYFGAATYIYKFLIKHYCSWNICGWTLNIFHQKITHFDLGNDSKILSELDEGRKVFLESDDDSKNVDVSGQSIITNHLQEEKLLVYQGKDELADCDKTNTGYTSKKKVQKEWSCALCQISTTSENCLGSHLQGKQHKAKEKELRVGLHATNIPYVVSFSQERIKGMVLLRNFNQIAKILRPVSRPTIWCEWKKPELGWTKLNTDGSINKVTAGFGGLLRDYRGEPICAFVSKAPQGDIFLVELWAIWRGLVLSIGLGIKSIWVESDSMSVVNTINKVQHCPKAETCLIQIWKLLSKFDDYRISHSWRETNRAADHLAKMALCGNDVVLWPADFSHSLCNIIQDDARGTKYPRR 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g03522 440 SUPERFAMILY beta-beta-alpha zinc fingers 183 232 IPR036236 -
Trre9g03522 440 SUPERFAMILY Ribonuclease H-like 285 412 IPR012337 -
Trre9g03522 440 Pfam Zinc-finger of C2H2 type 199 223 - -
Trre9g03522 440 PANTHER OS05G0353850 PROTEIN 266 421 - -
Trre9g03522 440 Gene3D Classic Zinc Finger 184 235 - -
Trre9g03522 440 Pfam TB2/DP1, HVA22 family 28 103 IPR004345 -
Trre9g03522 440 SMART ZnF_U1_5 196 230 IPR003604 GO:0003676|GO:0008270
Trre9g03522 440 Pfam Reverse transcriptase-like 289 407 IPR002156 GO:0003676|GO:0004523
Trre9g03522 440 Gene3D - 285 408 IPR036397 GO:0003676
Trre9g03522 440 CDD RNase_H_like 288 405 IPR044730 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g03522 Trre-Chr9 43998862 44001844 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g03522 - - gmx:102661917 571.237
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre9g03522 9 43998862 44001844 Trre9g03522 9 43998862 44001844 ECH