Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g03485 ATGCGTGTTGAAGTGGATCTAGGGTTTTCTTCGTTTCTCTTCGTTGCTTTAATTTTTATCGTTTTACCTGTGATTGGTTTCGTTATACGTTATAAGTGGCGGCGTGCGGCGGAGAGGGCGGAGGAGGTTAAGAGATTGTTGATTTTCACGGCTGAGGAGTCTGCTAGGGCTGAGCGTGAGGCAGCAGCTTCGTATCAATATGCTGTTGCTGCGAATTCGTATCAATATCAAAACGGTGCCGTTTCAGCTTCATCTCAATTTGTTTCACCGAATTCGCATCAAAACGGTGACGTTTCTGTTGCTAAGAGTAATCAATGTGTAGTGTGTTTCTCTCCCACTACTACAAGGTGTGCAAGGTGCAAAGCAGTTCATTACTGTTCTGGTAAGTGCCAAATTGCTCATTGGCGTCAAGGTCACAAAGATAAATGTCATCCTCCCAGCACAGCTAGCCAGATTGATGATTTGGTAAGCGATATTCGTAAGAAGGTAGCCAAGCCAGACCGCCAAGGAATCAATGACGAGAAGTCTCAGATTGAAAGCACAGAGATTACAAAATCCTCTGAGAAACCCCCATTGTCTGATATTAAACGTTCTCCCAAATCTTCATGTGTAAAGACTGATAATGCTAGAGTTGAGTCTCTTGCAGAGGAAAATATCGCAGACTCTAATTCTGAATTATCATGTACCTCATTTTCTGGATTTTCTGCTTCCACTGGTGCTAACGGATCATCATCATCATCTGATGATTCATCTGTTTGTGAGAGTATCATCTCAAATGAGCATGAAAGATCCGAGGGACCTATTTGTACTGACCACACTTTTGACGTCTCTAACAACACATCAAATGGTCATAGCATCGGTGCAAAAATCCCATTGTCACCTAAGTTTGCTAGTTTGGTTGATTCAGCTAGACCTGGTATTGGTAAAGAAGAGATTAAGCTCACATCAAATGATAGTTCAGGTTTGGTGATGCGGAAAGGGGGAACAGAGCCTTCTAAAGTGTCGTCTGGATTTTGGAATGGCACTCTTGATTCAAATGGGATAAAAGATGACTCTTTTGGTGACCCTCTTCCATCTCACTCTAATGAATCTGTTACAAAGTCTGTTGGGAAAAATATGCCAAACATAGGATTAGAATCTTCCAAGAATGAAGGTCTTGATTCTACTCGTTATGCAGATGCTTCAAGCATCCATAACTTGCACACCGTTGGCTCTAAGGTATCAAATCATGTTGTGATCAACCCTGGAAGCAACTTGAGATCTGCTGAAATTAGTTGTCTTCCATGTACATCTGCTGAAAATAAGTTAGCTTCTAGAGCTGTAGCGGAGGAGCATTTACATTATAGTTCAAAGTTTACGAACAATGGTACCGCTTCTGGCACTGCTAATTCATCTCAGGTTGCTAATTGCTCTCCAACTTCCAAGGATGGCCTTAAAACATCTGTCACGAAAGTTGTTGATCAGTTTAGAGGATCAAATATGTCCAAACACTTTCCAATAGCTGTTGGAAGTGATGCTGCTGTGAAATACAGTGACAAGGGTCTTTTTCCATATGATTTGTTTGTCAAACTTTATAATTGGAACAAAGTGGAGGTCCAACCATTTGGTCTTACAAATTGTGGAAACAGCTGTTATGCGAATGCTGTACTCCAGTGCTTGGTATTTACACCACCATTGACTGCATATTTGCTTCAAGGACTTCATTCTAAATCATGTGTAAATAAAAAATGGTGTTTCATCTGTGAGTTTGAAAGTTTGATTTTGAAGTCAAAAAACACAAAATCTCCCCTCTCACCTATAGGCATACTCTCTCAACTACAGAATATTGGAAGTCAACTTGGTAATGGAAGAGAAGAAGATGCACATGAATTTCTAAGGCATGTGATTGAAACAATGCAATCTGTTTGTCTTATGGAATGTGAGGCTAATGCATCAGACTCATTAAAAGAACAAACTAATTTAGTGGGTCTTACATTTGGAGGCTACCTTCGATCAAAGATAAAATGCATGAAATGTGGAGGGAAATCTGAGCGTCAAGAAAGGATGATGGATTTGACTGTTGAGATAGAAGGTGAGATAGCATCCTTGGAGGATGCCCTTAAACAGTTTACAAGCACTGAGACTCTGGATGGAGAAAACAAGTACCACTGTGTCAGATGTAAATCATATGAGAAGGCCAAGAAGAAAATGGCAGTTTCAGAGGCACCTAATGTTCTTACAATAGCATTGAAGAGATTTCGGTCTGGAAAATATGGGAAGCTCAATAAGCCAGTTCGGTTTCCTGAAATACTTGACTTAGCGCCTTTCATGAGTGGAACTAGTGATTTGGCTATATACAGGCTGTACGGGGTCGTTGTGCACTTGGATACAATGAACGCTTCTTATTCAGGTCACTATGTGTGTTATGTGAAGAATTTCCAGAACAGTTGGTTCAAGATTGATGACAGTGTGGTGACGCCTGTTGAATTGGAAACGGTCTTAACAAAAGGCGCATACATGCTTCTTTATGCTAGGTGCTCACCTAGGGCCCCAAGATTAATCAGGGACATGATAGTGTCCTCAAATTCAAAAACCAAACTGAATGGAAAAACTATTATAATGAAGTACAAACATGCACCAACCACTGAATACATGACTAATTCAGTTTCTACGACATATGATTTACCCGCCTTAGAGACAATCAATTCGAAGTTCTATCGCATGAAAAGTATCATGGAAGAAGACTCATCAAGTGATAATTCATCCCTCTTCAGCAACAATTCAGACGATTGTTCTTGCAGCACCGATAGCACATGTGATTCAACAAGTACCGACGAATTTGCAGATTATATTTTTGGTAATTTAGGACGAGGTGGAGGCGGTGGCACCGCCTCCACATGTTCAAGGGTGGGGATAGACGGTCTTTTGTATAGGAGTAGACCGGCGGACGTTGAAAGGAGTGAGAGATGTGTTTCTCATTTGCATCATAACACAAGTATAGAACATAGGAAGTTAGATACATGTAGGAGTAGTTTTAGGGAGAGTAATTCTTTTGAGAGAGCAGGGTCCAATGATTTTACCTATATAAATTCTGGTGTAACACATAGAAAGGCAAGAGAAAGAAAGGATTGA 3111 0.406 MRVEVDLGFSSFLFVALIFIVLPVIGFVIRYKWRRAAERAEEVKRLLIFTAEESARAEREAAASYQYAVAANSYQYQNGAVSASSQFVSPNSHQNGDVSVAKSNQCVVCFSPTTTRCARCKAVHYCSGKCQIAHWRQGHKDKCHPPSTASQIDDLVSDIRKKVAKPDRQGINDEKSQIESTEITKSSEKPPLSDIKRSPKSSCVKTDNARVESLAEENIADSNSELSCTSFSGFSASTGANGSSSSSDDSSVCESIISNEHERSEGPICTDHTFDVSNNTSNGHSIGAKIPLSPKFASLVDSARPGIGKEEIKLTSNDSSGLVMRKGGTEPSKVSSGFWNGTLDSNGIKDDSFGDPLPSHSNESVTKSVGKNMPNIGLESSKNEGLDSTRYADASSIHNLHTVGSKVSNHVVINPGSNLRSAEISCLPCTSAENKLASRAVAEEHLHYSSKFTNNGTASGTANSSQVANCSPTSKDGLKTSVTKVVDQFRGSNMSKHFPIAVGSDAAVKYSDKGLFPYDLFVKLYNWNKVEVQPFGLTNCGNSCYANAVLQCLVFTPPLTAYLLQGLHSKSCVNKKWCFICEFESLILKSKNTKSPLSPIGILSQLQNIGSQLGNGREEDAHEFLRHVIETMQSVCLMECEANASDSLKEQTNLVGLTFGGYLRSKIKCMKCGGKSERQERMMDLTVEIEGEIASLEDALKQFTSTETLDGENKYHCVRCKSYEKAKKKMAVSEAPNVLTIALKRFRSGKYGKLNKPVRFPEILDLAPFMSGTSDLAIYRLYGVVVHLDTMNASYSGHYVCYVKNFQNSWFKIDDSVVTPVELETVLTKGAYMLLYARCSPRAPRLIRDMIVSSNSKTKLNGKTIIMKYKHAPTTEYMTNSVSTTYDLPALETINSKFYRMKSIMEEDSSSDNSSLFSNNSDDCSCSTDSTCDSTSTDEFADYIFGNLGRGGGGGTASTCSRVGIDGLLYRSRPADVERSERCVSHLHHNTSIEHRKLDTCRSSFRESNSFERAGSNDFTYINSGVTHRKARERKD 1036
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g03485 1036 Pfam MYND finger 106 143 IPR002893 -
Trre9g03485 1036 ProSiteProfiles Zinc finger MYND-type profile. 106 143 IPR002893 -
Trre9g03485 1036 SUPERFAMILY Cysteine proteinases 531 842 IPR038765 -
Trre9g03485 1036 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 535 839 IPR028889 -
Trre9g03485 1036 Pfam Ubiquitin carboxyl-terminal hydrolase 535 836 IPR001394 GO:0004843|GO:0016579
Trre9g03485 1036 MobiDBLite consensus disorder prediction 189 203 - -
Trre9g03485 1036 MobiDBLite consensus disorder prediction 357 384 - -
Trre9g03485 1036 MobiDBLite consensus disorder prediction 164 209 - -
Trre9g03485 1036 MobiDBLite consensus disorder prediction 454 474 - -
Trre9g03485 1036 MobiDBLite consensus disorder prediction 164 182 - -
Trre9g03485 1036 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 536 551 IPR018200 GO:0004843|GO:0006511
Trre9g03485 1036 Gene3D - 92 148 - -
Trre9g03485 1036 FunFam Ubiquitin carboxyl-terminal hydrolase 15 97 147 - -
Trre9g03485 1036 ProSitePatterns Zinc finger MYND-type signature. 106 143 IPR002893 -
Trre9g03485 1036 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 194 842 - -
Trre9g03485 1036 FunFam Ubiquitin carboxyl-terminal hydrolase 15 529 847 - -
Trre9g03485 1036 SUPERFAMILY HIT/MYND zinc finger-like 103 145 - -
Trre9g03485 1036 Gene3D Cysteine proteinases 528 847 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g03485 Trre-Chr9 43695849 43702283 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g03485 467 843 Miscellaneous Gene Families AT4G31670 46.392 4.03e-120 380
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g03485 K11855 - gmx:100782303 1203.35
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre9g03485 9 43695849 43702283 Trre9g03485 9 43695849 43702283 ECH