Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g03188 ATGAAATCTACGGTTGAAGGATCGATGGTAGCTGAAAGATTTGATGATGGAGAAAAAGACAAGAAGAAGAAGCGTCGATCTAATCGTCGAAACAAGCAGAATCCTTCTTCATCTTCAGGGTTAGTATCTGAAGTAAATGAGGCCATTGGGGTGTCCCCCGAATGCTCGGGCAAAAATGGAACCCCCACTCAATCATCTGGATCTTTTAGCAATTCACTGAAGCAGCAGGGTGTTATTGTTTCGTCCTCTAATGAGCAAGAATTATCCAAAGCACCAATTGTTGAATCCATTTCAATGCCTCTAATGCATCCTAATGATCAAGGAGTACCTGTTGATTTGCAAAACATGCAAATACATGAAGGAGGAATTGTTTCAAAACCATTTTCAGAACCCATCGGTTGCGTAGGATCATCAGCAACATATAAAAAGAATGACTCTTCCCCTTACAGTCAAATTGGTCTTTCTGGCCAGCGAAGTTATTTTAGTCCACATTGGCCTGTTGAGGCTGTTGAGAAGGCATTGGAGAGAGGTGATGTTTTCAAAGCTGTCTTTCGTGTTAATGCTCACAATAAACTTGAGGCCTACTGCAAAATTGATGGAGTGCCAACAGATATTCTCATAGGTGGGGCTCCAGCCCAGAATAGAGCTGTGGAAGGCGATATGGTTGCAATTAAGATTGATCCTTTGCCATTGTGGACAAAAATGAAAGGACCAAATGTGACCAACAACAATACCGCGGTACTGGAAGGTTGTAACCTTGTGGAAGATAATGTTGTGGGTGAAAACAATTGTGAAGGAAACAGAAGCTGTCCTGCTCAAAGCAAGGAGGAATCTTATCCATTTCCTGATAATAATACTACACAAGGTTTACCTAACCATTTACGTTTCATTGGACTAACTGGTCGTGATAACAATGATGATCTTCACTATGATGCATCTGCTTCCTTGAAGAATAATTCCCTTAGTGGACAGACTGAATTTATGAATGCAGTGGAGAAGATGTGTTTGTTGGTTAATTCTTTCCCTTCTAAAAGGCCAACAGGAAGGGTCGTTGCTATTATTGAGCGGTCTCTGCGTCGGGAATGTATTATCGGCCATCTTAATGTGAAGCAGTGGGTTTTCTTAAGGGACACAAACAAGAAAGATGCAAGAAAGAATAAGAATTTGGTGCCTGAGGATGAATATATCCAACTGACATCAATTGATCCAAAGTTTCCTAACATAATACTTCGGGTCATAGAGTTACCAAAGAGCATTGCTAAAAGACTGAAAAGTGGAGATGGAGCAATTGAAATGGATTTGGTAGCTGCACAAATTGATGATTGGCTTGAAGGAAGTCCTTTGCCCGAGGGACACATCTTGCATATTTTTGGTCGAGGCAGTGAAATTCAGCCCCAACTAGATGCTATTTTGTTTAAAAATGCAATCTGTACGTCTGAATTTTCACCTGAAACCCTGTCCTGCTTGCCACGTGTTCCTTGGGAGTTACCATTAAAGGAATTAGAAAATCGAACTGATCTTAGAAATTTGTGCATATTTACTATTGATCCTTCGACTGCAACTGATCTGGATGATGCACTGTCAATTGAGAAGTTGCCTAATGGAAATTACAGAGTAGGCATCCATATTGCTGATGCATCATACTTTGTTACACCGGACACAGCTTTAGATATAGAGGCAAAGTATAGGTCAACAAGTGTTTATATGTTGCAAAAGAAGTTACCAATGTTGCCTGCATTAATCTCAGAAAATATTGGATCACTTAATCCTGGAGTGGATCGACTTGCATTTTCCATGCTCCTAGATTTAAATGTTTCCGGGGATGTTGTAGACCGTTGGATTGGTCGTACTATTATTCAATCTTGTTGCAAGCTTTCATATGAACATGCACAAGACATCATTGACAAGGCTTTTGATTTAGAGAGTTCAAACTTTCACGAAGATGACTATCCTAAAGTGCATGGCCATTTTGGTTGGTCTGATGTTATTACTTCTTTGAAGAGTCTCTATGAAATTTCAAAAGTTTTGAAATACAAGAGATTTACTGGAGGGGCTCTGCGGCTTGATAACCCCAAAATTGTTATCCTGTTTGATGAAAATGGCATTCCTTATGATAGTACGTTTTCTGAACAGAAAGAATCCAACTTTCTTATTGAGGAATATATGCTTTTGGCCAATACAACAGCGGCTGAAGTAATATGTAGAGCTTATCCTGATGTTGCACTATTGCGGAGGCATCCTGAACCTCATTTGCGGAAGCTGAAAGAGTTTACTGCATTTTGTCAGAAGCATGGTTTAAATTTAGACACTTCTTCATCTGGTCATATCCATCGGTCCTTAGAGAAGATAAAGGAAAAGCTCAAGGATGACCCTGTGCTTTATGAGATACTTATTTCCTATGCTACAAGGCCAATGCAGTTGGCGTCTTACTTCTGTAGTGGCGATTTTAAGGATAGTGAACATGAATGGGGTCATTATGCACTAGCTGTCCCTTTATACACTCATTTTACATCACCTTTACGCCGATATCCGGATATTGTTGTTCATCGGACCCTACTTGCTACGATAGAGGCCGAGGAAATATATTTGAAGCAGGTTGGAAAGGAAGTGGGTGTGAAAAAAAGATGTTTCACCGGCATCAACTTCGATAAAAAAGCTGCAGAGTCTGTTGAATGCAGGGAAGCTTTATCAGCTGCAGCTTTGAAGCATGTGGTTCCTAGTGCTGAAAAACTTGCTATTTATGCTGCTTATTGCAATGAGAGAAAGCTAGCTAGTAGAAATGTTAAGGATGCCTGTGAGAGACTTTACGTATGGTTTCTGCTGAAGCAGAAGGTCATATTTTCAGAAGCAAGAATATTGGGACTAGGCCCAAAGTTTATGTCAATTTATATTCAAAAGCTGGCTGTTGAGAGACGCATATATTATGATGAAGTTGATGGTTTAAATGCAGAGTGGCTTGAGGCAACATCCACATTGGTGCTTAGCATATCTCCTAATAAGCGTGCATCTAGGAGGGGCGGCGCTAACAAATGGAGAACATTGTCAGAAACTGTGTTGCTTGCTTGTCCATATGACCTGGAAGTAGAAGCTATTGTATCTGACATGGACAAGCAGCACATGTCCCAATCTGAAATTGAGCCCGCGTATTTTCCACTCACCGTGCACCTTCTTTCATCAATTCCAGTAGCACTTCATGCCATTGGTGGTGATGACGGCCCTCTTGATTTTGGAGCGAGGTTGTACATGAGCTCCTATTTTGTGTAA 3264 0.4066 MKSTVEGSMVAERFDDGEKDKKKKRRSNRRNKQNPSSSSGLVSEVNEAIGVSPECSGKNGTPTQSSGSFSNSLKQQGVIVSSSNEQELSKAPIVESISMPLMHPNDQGVPVDLQNMQIHEGGIVSKPFSEPIGCVGSSATYKKNDSSPYSQIGLSGQRSYFSPHWPVEAVEKALERGDVFKAVFRVNAHNKLEAYCKIDGVPTDILIGGAPAQNRAVEGDMVAIKIDPLPLWTKMKGPNVTNNNTAVLEGCNLVEDNVVGENNCEGNRSCPAQSKEESYPFPDNNTTQGLPNHLRFIGLTGRDNNDDLHYDASASLKNNSLSGQTEFMNAVEKMCLLVNSFPSKRPTGRVVAIIERSLRRECIIGHLNVKQWVFLRDTNKKDARKNKNLVPEDEYIQLTSIDPKFPNIILRVIELPKSIAKRLKSGDGAIEMDLVAAQIDDWLEGSPLPEGHILHIFGRGSEIQPQLDAILFKNAICTSEFSPETLSCLPRVPWELPLKELENRTDLRNLCIFTIDPSTATDLDDALSIEKLPNGNYRVGIHIADASYFVTPDTALDIEAKYRSTSVYMLQKKLPMLPALISENIGSLNPGVDRLAFSMLLDLNVSGDVVDRWIGRTIIQSCCKLSYEHAQDIIDKAFDLESSNFHEDDYPKVHGHFGWSDVITSLKSLYEISKVLKYKRFTGGALRLDNPKIVILFDENGIPYDSTFSEQKESNFLIEEYMLLANTTAAEVICRAYPDVALLRRHPEPHLRKLKEFTAFCQKHGLNLDTSSSGHIHRSLEKIKEKLKDDPVLYEILISYATRPMQLASYFCSGDFKDSEHEWGHYALAVPLYTHFTSPLRRYPDIVVHRTLLATIEAEEIYLKQVGKEVGVKKRCFTGINFDKKAAESVECREALSAAALKHVVPSAEKLAIYAAYCNERKLASRNVKDACERLYVWFLLKQKVIFSEARILGLGPKFMSIYIQKLAVERRIYYDEVDGLNAEWLEATSTLVLSISPNKRASRRGGANKWRTLSETVLLACPYDLEVEAIVSDMDKQHMSQSEIEPAYFPLTVHLLSSIPVALHAIGGDDGPLDFGARLYMSSYFV 1087
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g03188 1087 SUPERFAMILY Nucleic acid-binding proteins 347 476 IPR012340 -
Trre9g03188 1087 SMART RNB_2 504 858 IPR001900 GO:0003723|GO:0004540
Trre9g03188 1087 Pfam RNB domain 504 856 IPR001900 GO:0003723|GO:0004540
Trre9g03188 1087 MobiDBLite consensus disorder prediction 1 85 - -
Trre9g03188 1087 Pfam Dis3-like cold-shock domain 2 (CSD2) 395 474 IPR041505 -
Trre9g03188 1087 MobiDBLite consensus disorder prediction 56 85 - -
Trre9g03188 1087 SUPERFAMILY Nucleic acid-binding proteins 466 943 IPR012340 -
Trre9g03188 1087 FunFam DIS3-like exonuclease 2 150 252 - -
Trre9g03188 1087 SUPERFAMILY Nucleic acid-binding proteins 159 356 IPR012340 -
Trre9g03188 1087 ProSitePatterns Ribonuclease II family signature. 825 849 IPR022966 -
Trre9g03188 1087 Gene3D - 154 252 - -
Trre9g03188 1087 PANTHER RIBONUCLEASE 24 1084 - -
Trre9g03188 1087 Hamap DIS3-like exonuclease 2 [DIS3L2]. 22 1062 IPR028591 GO:0000175|GO:0034427
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g03188 Trre-Chr9 40363959 40369968 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g03188 K18758 - gmx:100817387 1526.15
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre9g03188 9 40363959 40369968 Trre9g03188 9 40363959 40369968 ECH