Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g03172 ATGCCTCCTCTTCCTTCCTCCATATCTTCGAGATCTGAATCATCTCCAAACCACATCGTCAACCACAATATCTCCAACGGTGGCGATTCAAGCCGTAGAAATCATCAGCAAAAGCAATTGGTTGTTCCAACGGCGATTGACGTTAGGATCAACGACCTGGTTGGGAATGGAATATCAGGAGTATTACAGAAATGGGTGAACTATGGTAGAGGATGGAGACATCGGTGGTTCGTGCTACAAGATGGCGTTCTCTCCTATTACAAGATTCATGGACCTGATAAGATCGTAATCAATCCTGAAACCGAGAAAGGATTCAAAGTTATTGGTGATGAATCCATGCGTATCATCTCTCGCAACCGAAGTTCTCATCACTCTCAACATCAGCGAAAGGCTTTCGGTGAAATCCACCTCAAGGTTTCAACTATTCGCGAGAGCAGATCCGATGATAAACGGTTTTCAATTTTCACTGGGACGAAGACGCTGCACTTGAAAGCAGAAACTCGTGAAGATCGAGTGGCATGGTTGGAGGCCTTGCATGCAGTCAAAGATATGTTTCCACGGATGTCCATCAGTGAGCTGATGGCTCCGGTGGACAATACAGCCATTTCAACTGATAAGCTTAGGCATCGGCTTATGCAAGAAGGTGTTAGTGAGGCAGCCATCCAGGATAGTGAGCAAATTATGAGAAGTGAGTATGCAGCTCTTCAAAACCAGCTTTTGCTACTTAAGCAAAAGCAGTTGGCACTAATTGACAATTTACGCCATTTGGAGACAGAGAAGGTTGACCTGGAAAACACTGTTGTTGATGAGAGCCAAAGAAAATGGAATGATCAAGAGGCTTCTTCCACAATGAGGCAGGAAAAGTTTAGTGAAGTTGGTGCAAGTGGGTCTGAAGATGATAATGAGAGAAATGACATGGCAGAGGACGATACAGATGATGATGATGATGCCGCCTTTTTTGACACACGTGATTTTATATCATCATCCAGTTCTATTAAAAGTAAGACTTCATCCTTTTCTTCAGATGATGAAGGAATCTCTGTAGTTGGATCCGAGGGGGATATAGATCCTGCTATTAGATCTGTTGGGACCAACTATCCTCACGTTAAGAGGCGTAATAAATTGCCTGAACCTGTTGAAAAAGAGAAAGGTGTCAGTCTTTGGTCTTTGATTAAGGATAATATTGGGAAGGATCTAACTAAAGTATGCCTCCCTGTTTATTTTAATGAACCTCTCTCCTCTCTTCAAAAATGCTGTGAAGAAATGGAGTACTCATATCTCCTTGACCGAGCTTATGAATGGGGAAGAAGAGGTAATACGCTTATGAGGATTCTCAATGTTGCTGCTTTTGCTGTATCTGCCTATGCTTCAACTGATGGGAGAATTTGCAAACCCTTTAATCCATTACTGGGGGAGACATATGAGGCTGAATTTCCAGATAAAGGCTTTCGTTTCATCTCAGAGAAGGTCAGTCACCACCCTATGATAGTTGCATGTCACTGTGAGGGTACAGGTTGGAAATTTTGGGCAGATAGCAACTTAAAGAGCAAATTTTGGGGGCGATCAATTCAACTCGATCCTGTTGGTATTTTGACATTAGAATTTGATGATGGTGAAGTATTTCAGTGGAGCAAGGTTACTACATCAATATACAATCTTATTTTGGGAAAGCTGTATTCTGATCATTATGGTACAATGCGCATTCAGGGAAACAAAGAATACTCATGTAAACTGAAATTCAAGGAACAATCTATAATTGATCGCAATCCTCACCAGGTTCAAGGTATTGTTCAGGACAGAAATGGGAAAACATTGGCTACCTTAATTGGAAAGTGGGATGACAGCATGTATTATGTTAATGGAGACTATGGTGGAAAGGGAAAAAGTTATGAATCGTTGTCAGATGCACATATACTATGGAAGCGGAGCAAGCCTCCCAAGTTTCCTACTAGATATAACTTAACTCGTTTTGCTATCACACTAAATGAACTTACCCCAGGATTAAAGGAAAAGCTGCCACCTACAGATTCTAGGTTAAGACCAGATCAGAGGTATTTGGAAAATGGGGAGTTTGAAAAGGCAAATTCAGAAAAATTGCGGCTAGAACAGCGACAACGGCAGGCTCGGAAGATGCAAGAGAGCGGTTGGGAACCCCGATGGTTTGCTAGAGATAAAACAAGCGGTACCTACTGCTACATAGGAGGATATTGGGAAGCCCGACAACAAAGAAGTTGGAACTCCTGTCCTAATATTTTAGGTCAAATTTCGTCTGATCATCATTTAGATGAAGGTTCATAG 2298 0.4195 MPPLPSSISSRSESSPNHIVNHNISNGGDSSRRNHQQKQLVVPTAIDVRINDLVGNGISGVLQKWVNYGRGWRHRWFVLQDGVLSYYKIHGPDKIVINPETEKGFKVIGDESMRIISRNRSSHHSQHQRKAFGEIHLKVSTIRESRSDDKRFSIFTGTKTLHLKAETREDRVAWLEALHAVKDMFPRMSISELMAPVDNTAISTDKLRHRLMQEGVSEAAIQDSEQIMRSEYAALQNQLLLLKQKQLALIDNLRHLETEKVDLENTVVDESQRKWNDQEASSTMRQEKFSEVGASGSEDDNERNDMAEDDTDDDDDAAFFDTRDFISSSSSIKSKTSSFSSDDEGISVVGSEGDIDPAIRSVGTNYPHVKRRNKLPEPVEKEKGVSLWSLIKDNIGKDLTKVCLPVYFNEPLSSLQKCCEEMEYSYLLDRAYEWGRRGNTLMRILNVAAFAVSAYASTDGRICKPFNPLLGETYEAEFPDKGFRFISEKVSHHPMIVACHCEGTGWKFWADSNLKSKFWGRSIQLDPVGILTLEFDDGEVFQWSKVTTSIYNLILGKLYSDHYGTMRIQGNKEYSCKLKFKEQSIIDRNPHQVQGIVQDRNGKTLATLIGKWDDSMYYVNGDYGGKGKSYESLSDAHILWKRSKPPKFPTRYNLTRFAITLNELTPGLKEKLPPTDSRLRPDQRYLENGEFEKANSEKLRLEQRQRQARKMQESGWEPRWFARDKTSGTYCYIGGYWEARQQRSWNSCPNILGQISSDHHLDEGS 765
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g03172 765 MobiDBLite consensus disorder prediction 332 354 - -
Trre9g03172 765 Pfam Pleckstrin homology domain 64 179 - -
Trre9g03172 765 PANTHER OXYSTEROL-BINDING PROTEIN-RELATED 57 740 IPR000648 GO:0008289
Trre9g03172 765 SUPERFAMILY Oxysterol-binding protein-like 381 756 IPR037239 -
Trre9g03172 765 FunFam Oxysterol-binding protein-related protein 2A 683 754 - -
Trre9g03172 765 FunFam oxysterol-binding protein-related protein 1D isoform X1 472 644 - -
Trre9g03172 765 Gene3D - 683 751 - -
Trre9g03172 765 MobiDBLite consensus disorder prediction 274 318 - -
Trre9g03172 765 MobiDBLite consensus disorder prediction 7 36 - -
Trre9g03172 765 Gene3D - 56 185 IPR011993 -
Trre9g03172 765 Pfam Oxysterol-binding protein 386 740 IPR000648 GO:0008289
Trre9g03172 765 ProSiteProfiles PH domain profile. 55 183 IPR001849 -
Trre9g03172 765 MobiDBLite consensus disorder prediction 1 36 - -
Trre9g03172 765 SUPERFAMILY PH domain-like 58 183 - -
Trre9g03172 765 Coils Coil 253 273 - -
Trre9g03172 765 Gene3D - 472 645 - -
Trre9g03172 765 SMART PH_update 56 185 IPR001849 -
Trre9g03172 765 Coils Coil 691 711 - -
Trre9g03172 765 CDD PH_ORP_plant 58 190 - -
Trre9g03172 765 MobiDBLite consensus disorder prediction 302 318 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g03172 Trre-Chr9 40176249 40183186 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g03172 K20456 - gmx:100812036 1226.46
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre9g03172 9 40176249 40183186 Trre9g03172 9 40176249 40183186 ECH