Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g03061 ATGAACAACAATAACAGAAAAGATAATCATCATCATCATGACCTTGTTGGAAAAAGAACAAGGTTCATCATCAACAATAATACCAACGCCGTTTCTGATGATGATCTCACTGTTCCATCCTTACTCCATCAACAACAACAACAATCATCTCTGATGTCGTCTCATCAGGTTCAGCAGCAGCAACCTCAACCTCAAGGAGGGTTTCCTTTTTGGGGTGATCATGAAACCATGATCAATAACAATAACAACAACTGGAATCATCATGATCATGATCATCATCAATTGTCTCTTGATCTTTCTGCAATGACCCTTTTCGATGAAGATCATCACAATCACCATCATCATCAACCTAACAACAACAACAACATTACAAGAATTCGAGGTAACAACAACAATCTTGCTGACTCTATCACAAACATGAACACAAACATGCCTCCTTTTTGGGAATCTCATGCATATAACAACAACAACAACAACAACAACAACATTGTTGAAGATGAGACAGCAGCAGCAACAGCAGCAACACACCCACGTTTTCTAAACATGGGTACTCCAAAATCAACTTTTGGGGTTTCACCTTCACAAGGTTTAGTCTCTGATATCAAGTGGGGTATGCAAAAAGGTCACACCTTTGGTGGAGTTTCCCAAATGGGTTCTTCTATTGATCTTTGTTATGGACATGGTAGAGGTAGAGTTGTTCCACTTCAACTTCAAAACCCATCTTTCTATTCATCTTATAACCCTTATGAACAACGTCCTACACTGTATCCTTCACCAAGAGGATCTTCTTTTCTTATGGAAAATGATTTAGGATGGGATGTTGCAACAAATAATCCTATCATGTACACTACTACTCCAAATGTAAACAATGCAGCAGTGGCACCACCACCACCTCCTTCACCACAACCACAACAGCTTTATTATCCTTCTAATAGGCATTTTCAACTTCCTCAATCTCTTTATCCTACTAGACCTATTGAAGAACCAGTGGCTTTTAAATGTGATAGTAGTTTTATCTTACAAGAGAATGACATGAAAAATGACTGCAATAACTCATCATTGTTGGGTGGTAGAAAGTATCCATACTCACAAGAAGGAGTGATTCCTCAAATTTCTCGTTTTCCTACTAAAAGTGAAAATAGTAGAAATTTTGTAACCGATGACGACGATGATAATGATGTCGATGGTTATGATGATGTACAACAAAATTTGATGAACTTTGGTTCTTCTAGTTTTCCTGAGCTACAAAGTTATATGCTTCATATGGCAAGGGATCAGAATGGTGGTCGTTTTCTGCAGAGCTTGGTTGAGAAAGGAAGAGTTGAAGATATGGAAGTGGTGTTTAATGGAGTTATTGATAATGTTGTTGAGCTTATGATGGACCCTTTTGGGAATTATCTTGTGCAGAAATTGCTGGAGTTTTGTAGGGATGAACAAAGGTTGCAGATTGTTCTTATGTTGACTAAAGAACCTGGTCAGCTAGTCAGAACCTCTTTTAACACACATGGCACAAGAGTGGTTCAGAAGCTGATTTCTACTCTCAAATCAAAGAGGCAAATTGCATTAGTAAGGTCTGCAATTCAACCTAGTTTTCTTGATCTAGTTAAGGATCTGAATGGAAATCATGTCATACAACGTTGCTTGTCATCTTGGAGTGTTCAAGATAATGAGTTTATTTTTGATGCTGCAATAAAGTTCCTACTAGATGTTGCTACTCATCAACATGGCTGTTGTGTGCTTCAACGCTGCATTGATTTCTCAAAGGGAAAAAGTCTAGAAAAGCTGGTCAAAGAAATTTGCAAATATGGCTTTTCTCTAGCTCAAGATCCATATGGAAACTATGTTGTTCAATACATTATACAGATGCAAATTCCAAGTGCCATTGCTAAACTTACTCCTCAGTTCAAAGGGAACTATGTACTCCTTTCCACACAAAAATTTAGCAGCCATGTGGTTGAAAAGTGCCTCGAATTTATTGTAGAGGCTAGAGCAAGGATTGTCCAAGAATTGCTTTCTGTTCCTCAATTCGAGCGTCTGCTGCAAGACCCTTATGGCAACTATGTCGTTCAACGTGCTCTTGAATTCACTAAGGGCTCTTTGCATGCATCTTTGGTTGAAGCAGTTAGAGCCCACAAAATGTTGCGTACAAGCCCATATTGCAAGAGGATTTTCTCAAAAACTCAGTTTAAGAAGTGA 2196 0.3839 MNNNNRKDNHHHHDLVGKRTRFIINNNTNAVSDDDLTVPSLLHQQQQQSSLMSSHQVQQQQPQPQGGFPFWGDHETMINNNNNNWNHHDHDHHQLSLDLSAMTLFDEDHHNHHHHQPNNNNNITRIRGNNNNLADSITNMNTNMPPFWESHAYNNNNNNNNNIVEDETAAATAATHPRFLNMGTPKSTFGVSPSQGLVSDIKWGMQKGHTFGGVSQMGSSIDLCYGHGRGRVVPLQLQNPSFYSSYNPYEQRPTLYPSPRGSSFLMENDLGWDVATNNPIMYTTTPNVNNAAVAPPPPPSPQPQQLYYPSNRHFQLPQSLYPTRPIEEPVAFKCDSSFILQENDMKNDCNNSSLLGGRKYPYSQEGVIPQISRFPTKSENSRNFVTDDDDDNDVDGYDDVQQNLMNFGSSSFPELQSYMLHMARDQNGGRFLQSLVEKGRVEDMEVVFNGVIDNVVELMMDPFGNYLVQKLLEFCRDEQRLQIVLMLTKEPGQLVRTSFNTHGTRVVQKLISTLKSKRQIALVRSAIQPSFLDLVKDLNGNHVIQRCLSSWSVQDNEFIFDAAIKFLLDVATHQHGCCVLQRCIDFSKGKSLEKLVKEICKYGFSLAQDPYGNYVVQYIIQMQIPSAIAKLTPQFKGNYVLLSTQKFSSHVVEKCLEFIVEARARIVQELLSVPQFERLLQDPYGNYVVQRALEFTKGSLHASLVEAVRAHKMLRTSPYCKRIFSKTQFKK 731
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g03061 731 Pfam Pumilio-family RNA binding repeat 568 600 IPR001313 GO:0003723
Trre9g03061 731 Pfam Pumilio-family RNA binding repeat 681 698 IPR001313 GO:0003723
Trre9g03061 731 Pfam Pumilio-family RNA binding repeat 496 514 IPR001313 GO:0003723
Trre9g03061 731 Pfam Pumilio-family RNA binding repeat 531 561 IPR001313 GO:0003723
Trre9g03061 731 Pfam Pumilio-family RNA binding repeat 454 484 IPR001313 GO:0003723
Trre9g03061 731 Pfam Pumilio-family RNA binding repeat 605 620 IPR001313 GO:0003723
Trre9g03061 731 Pfam Pumilio-family RNA binding repeat 419 449 IPR001313 GO:0003723
Trre9g03061 731 Pfam Pumilio-family RNA binding repeat 638 671 IPR001313 GO:0003723
Trre9g03061 731 SUPERFAMILY ARM repeat 409 727 IPR016024 -
Trre9g03061 731 ProSiteProfiles Pumilio RNA-binding repeat profile. 598 633 IPR001313 GO:0003723
Trre9g03061 731 ProSiteProfiles Pumilio RNA-binding repeat profile. 562 597 IPR001313 GO:0003723
Trre9g03061 731 CDD Pumilio 422 726 IPR033712 GO:0003723
Trre9g03061 731 PANTHER RNA BINDING PROTEIN PUMILIO-RELATED 43 728 - -
Trre9g03061 731 MobiDBLite consensus disorder prediction 42 65 - -
Trre9g03061 731 ProSiteProfiles Pumilio RNA-binding repeat profile. 414 449 IPR001313 GO:0003723
Trre9g03061 731 ProSiteProfiles Pumilio RNA-binding repeat profile. 526 561 IPR001313 GO:0003723
Trre9g03061 731 FunFam Pumilio homolog 9 401 731 - -
Trre9g03061 731 ProSiteProfiles Pumilio RNA-binding repeat profile. 450 486 IPR001313 GO:0003723
Trre9g03061 731 ProSiteProfiles Pumilio RNA-binding repeat profile. 669 706 IPR001313 GO:0003723
Trre9g03061 731 SMART pum_5 489 524 IPR001313 GO:0003723
Trre9g03061 731 SMART pum_5 634 668 IPR001313 GO:0003723
Trre9g03061 731 SMART pum_5 450 485 IPR001313 GO:0003723
Trre9g03061 731 SMART pum_5 671 706 IPR001313 GO:0003723
Trre9g03061 731 SMART pum_5 598 633 IPR001313 GO:0003723
Trre9g03061 731 SMART pum_5 414 449 IPR001313 GO:0003723
Trre9g03061 731 SMART pum_5 562 597 IPR001313 GO:0003723
Trre9g03061 731 SMART pum_5 526 561 IPR001313 GO:0003723
Trre9g03061 731 ProSiteProfiles Pumilio homology domain (PUM-HD) profile. 392 731 IPR033133 GO:0003723
Trre9g03061 731 Gene3D - 398 730 IPR011989 -
Trre9g03061 731 ProSiteProfiles Pumilio RNA-binding repeat profile. 489 524 IPR001313 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g03061 Trre-Chr9 38982779 38987072 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g03061 - - tpra:123904497 1152.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre9g03061 9 38982779 38987072 Trre9g03061 9 38982779 38987072 ECH