Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g03043 ATGTCAAGTGGTGGATGTAGCATAGTATGGTTCAGAAGAGATCTGAGAGTAGAAGATAACCCTGCACTTGCTGCAGGTGTTAGAGCAGGTGCTGTAGTTGGTGTTTTTATATGGGCACCTGAAGAAGAAGGTCAATATTATCCTGGTAGAGTTTCAAGATGGTGGCTTAAAAATAGTTTGGCTCATCTTGATTCATCTTTGAGAAATCTTGGTACTCCTCTTGTTACTAAAAGATCAACTGATAGTGTTTCTTCTTTACTTGAAGTTGTTAAGTCCACTGGAGCCACTCAAATCTTTTTCAACCATTTATATGATCCATTGTCACTTGTGAGGGATCATAGAGCAAAGGAAATTCTAACAGCACAGGGCATTACCGTACGTTCGTTCAACTCGGATTTATTGTATGAACCATGGGATGTGAATGATGAAAATGGACAACCATTCACAACTTTTGATGCTTTTTGGGAAAGATGCCTTAGCATGCCTTATGACCCACAAGCACCTCTTCTCCCACCTAAAAGAATTATTCCTGGTGATGTATCAAGGTGTCCTTCTGATACATTGGTGTTTGAAGATGATTTAGAGAAAGCAAGCAATGCACTTCTTGCTCGAGCGTGGTCACCAGGATGGAGCAACGCAAACAAGGCATTAACAACATTCATAAACGGTCCACTGATTGAGTACTCGAAGAATCGCAGGAAAGCAGACAGTGCCACAACCTCATTTCTCTCTCCTCATTTGCATTTTGGAGAAGTTAGTGTCAAGAAAGTGTTCCATCTTGTCCGAATTAAGCAAGTCTTTTGGGCAAACGAAGGAAACCAAGCTGGCGAAGAAAGTGTTAACTTGTTTCTCAAGTCAATTGGTCTTAGAGAGTATTCAAGGTACATTAGTTTCAACCACCCTTATAGTCATGAAAGGCCTCTACTTGGACACCTTAAGTTTTTCCCTTGGGTGGTGAATGAAGGATATTTTAAGGCATGGAGACAAGGAAGGACAGGTTACCCTTTGGTGGATGCTGGAATGAGAGAGTTGTGGGCTACCGGGTGGCTTCACGATCGAATACGTGTTGTGGTTTCGAGTTTCTTTGTGAAGGTTTTGCAGCTTCCTTGGAGATGGGGGATGAAATATTTTTGGGATACCCTTTTGGATGCTGATCTCGAGAGTGATGCTCTTGGATGGCAATATATATCTGGTACTCTACCTGATGGTCGCGAATTCGACAGAATTGATAATCCACAGTTTGAGGGATACAAATGTGATCCAAATGGAGAATACGTGCGACGCTGGCTACCTGAACTTGCAAGATTACCAACCGAATGGATACATCATCCTTGGAATGCACCAGAATCAGTACTCCAAGCTGCAGGTATTGAACTTGGATCAAACTACCCTCTTCCAATTGTGGAAATAGATGCAGCAACAGTGAGACTTGAAGAAGCACTTATACAAATGTGGCAACTAGAAGCTGCTTCAAGAGCTGCAGCAGAAAACGGAACCGAAGAAGGTCTTGGTGACTCGTCTGAATCAGCTCCTATTGCTTTTCCTCAAGACATACAAATGGAAGAAAGACCTGAACCTGTTAGGAACAATCCACTTCACGGTACTCGGCGTTACCAGGATCAAATGGTACCGAGTATGACTTCTTCTAGGGTGAGAGTGGAAGAGGAAGAAACTTCTTCAGTTCGAAACTCGGCAGGAGACAGCAGAGCTGAAGTGCCAACAAATGCAATTGCACAGCAAAATGCAAGAGAGGCGGTGAACCAAGGAGTGTTGCAGAATGGGAATAGAAACACTAGACAAAGGCATAATAATAATAATACTACAACTACATTTTGGCTGAGAAATGCAGCTGAAGATTCAACAGCAGAATCTTCAAGTAGTACTAGAAGAGAAAGAGATGGAGGTGTAGTTCCGGAGTGGTCGCCACCGTCTTCTAACTTCTCAGATCAATTTGTAGATGATGAAAATGGTATAGGCGCCACTTCACCTTACTTGCAGAGGCATCCGCAATCTCACCAATTGATGAGTTGGACACGCCTACCTCAAACTGGGTGA 2055 0.4292 MSSGGCSIVWFRRDLRVEDNPALAAGVRAGAVVGVFIWAPEEEGQYYPGRVSRWWLKNSLAHLDSSLRNLGTPLVTKRSTDSVSSLLEVVKSTGATQIFFNHLYDPLSLVRDHRAKEILTAQGITVRSFNSDLLYEPWDVNDENGQPFTTFDAFWERCLSMPYDPQAPLLPPKRIIPGDVSRCPSDTLVFEDDLEKASNALLARAWSPGWSNANKALTTFINGPLIEYSKNRRKADSATTSFLSPHLHFGEVSVKKVFHLVRIKQVFWANEGNQAGEESVNLFLKSIGLREYSRYISFNHPYSHERPLLGHLKFFPWVVNEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTLPDGREFDRIDNPQFEGYKCDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPLPIVEIDAATVRLEEALIQMWQLEAASRAAAENGTEEGLGDSSESAPIAFPQDIQMEERPEPVRNNPLHGTRRYQDQMVPSMTSSRVRVEEEETSSVRNSAGDSRAEVPTNAIAQQNAREAVNQGVLQNGNRNTRQRHNNNNTTTTFWLRNAAEDSTAESSSSTRRERDGGVVPEWSPPSSNFSDQFVDDENGIGATSPYLQRHPQSHQLMSWTRLPQTG 684
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g03043 684 Pfam Blue/Ultraviolet sensing protein C terminal 510 629 IPR020978 -
Trre9g03043 684 Gene3D DNA Cyclobutane Dipyrimidine Photolyase, subunit A, domain 3 301 502 - -
Trre9g03043 684 Gene3D - 134 293 - -
Trre9g03043 684 MobiDBLite consensus disorder prediction 663 684 - -
Trre9g03043 684 ProSiteProfiles Photolyase/cryptochrome alpha/beta domain profile. 5 134 IPR006050 -
Trre9g03043 684 FunFam Cryptochrome 1 8 145 - -
Trre9g03043 684 SUPERFAMILY Cryptochrome/photolyase, N-terminal domain 7 178 IPR036155 -
Trre9g03043 684 Gene3D HUPs 8 206 IPR014729 -
Trre9g03043 684 Pfam FAD binding domain of DNA photolyase 283 479 IPR005101 -
Trre9g03043 684 PANTHER CRYPTOCHROME 6 489 IPR002081 -
Trre9g03043 684 FunFam Deoxyribodipyrimidine photo-lyase 301 490 - -
Trre9g03043 684 ProSitePatterns DNA photolyases class 1 signature 2. 352 371 IPR018394 -
Trre9g03043 684 Pfam DNA photolyase 7 163 IPR006050 -
Trre9g03043 684 SUPERFAMILY Cryptochrome/photolyase FAD-binding domain 192 488 IPR036134 -
Trre9g03043 684 PRINTS DNA photolyase signature 352 370 IPR002081 -
Trre9g03043 684 PRINTS DNA photolyase signature 332 348 IPR002081 -
Trre9g03043 684 PRINTS DNA photolyase signature 391 405 IPR002081 -
Trre9g03043 684 PRINTS DNA photolyase signature 143 159 IPR002081 -
Trre9g03043 684 MobiDBLite consensus disorder prediction 612 684 - -
Trre9g03043 684 NCBIfam cryptochrome photoreceptor 6 481 IPR014134 GO:0009785|GO:0009882
Trre9g03043 684 ProSitePatterns DNA photolyases class 1 signature 1. 332 344 IPR018394 -
Trre9g03043 684 MobiDBLite consensus disorder prediction 545 571 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g03043 Trre-Chr9 38785259 38789472 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g03043 K12118 - gmx:100786551 1238.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre9g03043 9 38785259 38789472 Trre9g03043 9 38785259 38789472 ECH