Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g03037 ATGGCGATCCTTAAGTGCTTCTTTGTTACGAATGTAAGGAAGGTGAATAAAAAGATGGGGAGAGTAAAATCTTCGAAGGAAAGTTTTGATACTTTACTTGCCAAACTACAACAATCGGTATCATTAGAGACTCGTAATTCGAAGCCAAACACCTTTGATCTTACTGTAGCGAATGGTTTACGGAAAAATTCGAGGTCCAATGTGAGGGTTATGAGTCTTGAAAACGCTATGAAAGGTGAAGCGAGAGAAGCTTATGAAGGGGGAGATGAGAATGAGAATGAAAATTCGGTGTCAATTAAGAGGGAACTATCAGATTTCGATCTTCAATTTGATGAACCTGTTGCAAGCAAAGAAGTGTATGATCCAACCGGAAAAACCCAAGTCACCGATGAATTTGAAGATCAAAGCGATAGGTACAGCCAAAAGAGCACTGATACAAACCGTAGTGGACATGTGAGTGACCCTGGTATTGGGAAGACGGATTACTTGGGTTCTCCAAAGCTCAAGCGGACGTGCTCTAACCTTGAAAATAGGGATGTTCGTAGGCAGATAACTCAATATTTGTCTCCTTCAAATTCGCAGTCTTTTGAAGACTTTCGCGATTTATCAACAAACCCGATGGTTAATCTTAAGAGGTCTAGGTCTATGACAAGTCACTGCAGTGCTGATAGAGTGATGTTGAAACGACATTCTTCAAGTCAAGTACTTCCTTCTGGAAGTAAAAAATTGTGGTGGAAGTTGTTCCTATGGAGCCACAGGAATATTCATAGAACATCTCGAAAATCAAAACTCGTTCCTGCTATTAGTTCTTTAAGTAATCAATTAGGGTATTCTTCAGACACCCTTGAGCCTAAACAAATCAAGGCACTGAGACACGTGCAATCATCGGTGGCAATTACTACTCATTCCCGTAACAAAATCATCGATGTTGATGATCAAAGGCAGAGCAAATTTGAAAAGCAATTGTTTTCTTTCTCGACAGAGTCATCTTCTTACGCCAGGGTGGATGCATGGATCAAAGATCTTGAAATCCAGGAACCGGTTCCTGAGTATGAGATTTTTGACGACAATGCCGGAAGTATTTCCTTCCCACCTTCTCCTGATGCTGGTAGACCGATGATAAGAAACATATCTCAGTTGACTCATTCAAATTCCAATCTTGTAAAGGATATTTTGAAAGCCAATACTATGGTCCAGTCACTGAATCCAGCTTCACCAATTGCTGACATATCTGGTTATGGTATAAAAGCCGTCCCGGTAATTTCACATTTTTCCAACCTCCGTTCGGTCAACCTGTCCAACAATTTCATCGTTTACATTTCACCGGGGTGTCTACCAAGGAGTGTTCAAACACTTAATTTGTCAAGAAACAAGATTAGCACTGTTGACGGCCTCAAAGAATTGACCCGGTTGCGTGTACTTGACCTAAGTTACAACTGCATCACAAAATTTGGACAAGGTTTGTCAAATTGTACACTTATCAGAGAGCTATATGTAGCTGGGAACAAGATAAGCGATGTCGAGGGGCTACATAGGTTGTTTAAGCTAACAGTTTTGGATTTGAGTTTCAACAGAATCACGACGACAAAAGCATTAGGCCAGCTAGTGGCTAACTACAACTCACTCCTTGTCCTTAACCTACTCGGAAATGCTATTCAGAAAAACATCGGTGATGTAAGACTAAACAAAAGAGTAACTAGTCTCCTTCCAAAGCTGGTGTACCTGAACAAACAACCCGTCAAGGCTCAAAGGGCGGTGCGCGAAATATTAATTGACCGTGTTGCTAAACCTGGACTAGGGAAGTGCAAGAAGCGGAGCTCCGTAAGAAAACCAATGAATAGAGTAGGACAAGGACAAGGAGGATCAACTTCCAACACAGGGCATAGAAGCGGTGCAAGTGTTGCACCGAAAAGCCGGAACTTGACAAAGAAGTGA 1935 0.416 MAILKCFFVTNVRKVNKKMGRVKSSKESFDTLLAKLQQSVSLETRNSKPNTFDLTVANGLRKNSRSNVRVMSLENAMKGEAREAYEGGDENENENSVSIKRELSDFDLQFDEPVASKEVYDPTGKTQVTDEFEDQSDRYSQKSTDTNRSGHVSDPGIGKTDYLGSPKLKRTCSNLENRDVRRQITQYLSPSNSQSFEDFRDLSTNPMVNLKRSRSMTSHCSADRVMLKRHSSSQVLPSGSKKLWWKLFLWSHRNIHRTSRKSKLVPAISSLSNQLGYSSDTLEPKQIKALRHVQSSVAITTHSRNKIIDVDDQRQSKFEKQLFSFSTESSSYARVDAWIKDLEIQEPVPEYEIFDDNAGSISFPPSPDAGRPMIRNISQLTHSNSNLVKDILKANTMVQSLNPASPIADISGYGIKAVPVISHFSNLRSVNLSNNFIVYISPGCLPRSVQTLNLSRNKISTVDGLKELTRLRVLDLSYNCITKFGQGLSNCTLIRELYVAGNKISDVEGLHRLFKLTVLDLSFNRITTTKALGQLVANYNSLLVLNLLGNAIQKNIGDVRLNKRVTSLLPKLVYLNKQPVKAQRAVREILIDRVAKPGLGKCKKRSSVRKPMNRVGQGQGGSTSNTGHRSGASVAPKSRNLTKK 644
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g03037 644 ProSiteProfiles Leucine-rich repeat profile. 515 536 IPR001611 GO:0005515
Trre9g03037 644 Pfam Leucine rich repeat 447 504 IPR001611 GO:0005515
Trre9g03037 644 FunFam Protein phosphatase 1 regulatory subunit pprA 385 566 - -
Trre9g03037 644 Gene3D Ribonuclease Inhibitor 489 587 IPR032675 -
Trre9g03037 644 SMART LRR_sd22_2 446 467 - -
Trre9g03037 644 SMART LRR_sd22_2 491 512 - -
Trre9g03037 644 SMART LRR_sd22_2 468 490 - -
Trre9g03037 644 SMART LRR_sd22_2 513 534 - -
Trre9g03037 644 SMART LRR_typ_2 513 535 IPR003591 -
Trre9g03037 644 SMART LRR_typ_2 468 491 IPR003591 -
Trre9g03037 644 SMART LRR_typ_2 424 447 IPR003591 -
Trre9g03037 644 Gene3D Ribonuclease Inhibitor 360 488 IPR032675 -
Trre9g03037 644 ProSiteProfiles Leucine-rich repeat profile. 470 492 IPR001611 GO:0005515
Trre9g03037 644 MobiDBLite consensus disorder prediction 612 644 - -
Trre9g03037 644 ProSiteProfiles Leucine-rich repeat profile. 448 469 IPR001611 GO:0005515
Trre9g03037 644 MobiDBLite consensus disorder prediction 601 644 - -
Trre9g03037 644 PANTHER NISCHARIN RELATED 204 619 - -
Trre9g03037 644 MobiDBLite consensus disorder prediction 127 141 - -
Trre9g03037 644 SUPERFAMILY Outer arm dynein light chain 1 412 581 - -
Trre9g03037 644 MobiDBLite consensus disorder prediction 114 169 - -
Trre9g03037 644 Pfam Leucine Rich repeat 515 527 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g03037 Trre-Chr9 38732999 38735317 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g03037 - - tpra:123920827 986.482
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre9g03037 9 38732999 38735317 Trre9g03037 9 38732999 38735317 ECH
Trre9g03037 9 38732999 38735317 Trre5g02347 5 17968404 17970261 PCT