Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g02623 ATGAGTTCTGATTATGGATACGCTGTTGAAGTTACTGGTCTTTCACCCAACGCCACTGATAAAGATGTCTATGAATTTTTTTCTTTCTCTGGTGCTATTCAACATGTTGAAATCATCAGGTCTGGTGATTATGCATGTACTGCTTATGTGACCTTCAAAGATGCATATTCTCAAGAAACTGCATGTTTACTCAGTGGAGCCACAATTTTAGATCAACGTGTATGCATAACACGCTGGGGGCAATATGAAGATGAATTTGATTTTTGGAACAGGCCCTCTCATAGTCATGAGGATGAGTATTCTTCAACTACACAGCATAGCAGTCAATTTGTTTCATCTGCTGGAGAAGTAGTTACTATGACTCAAGAAGTCGTCAAGACCATGCTAGCAAAGGGATATGTTCTTAGTAAGGATGCATTAGCCAAAGCTAAAGACTTTGATGAGTCGCATGGGGTTTCTGCCACTGCAACAGCCAAGGTTTCTGAATTAAGCCAGAGGTTCGGCCTTACAGATAAGCTATCTGCTGGTTATGAAGCTGTTAAATCTGTCGATCAGAGGTACAACGTCTCTGAAACAACCAAGGCAGCTGCATCCGCAACTGGAAGATCAGTAGCCGCCGCCGCAAACTCTGTGGTAAATAGTAGCTATTTTTCGAAGGGAGCCTTGTGGATGTCTGGTGCTCTAACCCGAGCGGCTCAAGCTGCATCTGATTTGGGTAACCGTGGTACTAAGCAGTAA 738 0.4322 MSSDYGYAVEVTGLSPNATDKDVYEFFSFSGAIQHVEIIRSGDYACTAYVTFKDAYSQETACLLSGATILDQRVCITRWGQYEDEFDFWNRPSHSHEDEYSSTTQHSSQFVSSAGEVVTMTQEVVKTMLAKGYVLSKDALAKAKDFDESHGVSATATAKVSELSQRFGLTDKLSAGYEAVKSVDQRYNVSETTKAAASATGRSVAAAANSVVNSSYFSKGALWMSGALTRAAQAASDLGNRGTKQ 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g02623 245 SMART rrm1_1 8 78 IPR000504 GO:0003723
Trre9g02623 245 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR 8 241 - -
Trre9g02623 245 Gene3D - 2 85 IPR012677 -
Trre9g02623 245 SUPERFAMILY RNA-binding domain, RBD 6 94 IPR035979 GO:0003676
Trre9g02623 245 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 11 72 IPR000504 GO:0003723
Trre9g02623 245 CDD RRM_Vip1_like 9 77 IPR034360 -
Trre9g02623 245 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 81 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g02623 Trre-Chr9 32315267 32319208 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g02623 - - gmx:100805907 390.193
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre9g02623 9 32315267 32319208 Trre9g02623 9 32315267 32319208 ECH