Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Trre9g02504 | ATGGGTACTGATAATTACTACAAAATACTAAAGGTGAATCATGATGCAACCTATGAAGAGTTGACGAATTCGTTTGAAAATTTATCTTTGAAATGGTACCCTGGTAAGATTAAAAATATTAAGAAAATTTATGAAGCTTATGATGTTCTTCGTAATCCTAAGAAGCCTGAGATCTATGATAAGTATGGTAAATATCCTGTGAATTTGGATGGTTTTAATGATGAATATGGTGATGGCAATAATTTTTCTGCTGGAGCTGTTAAGAAAGAGTTGTATTGTACTCTTGAAGAACTTTATAGTGGTTGCAGAAAGCAGCTTACTGTCCCAAGGACTGTTTGTGATGGGTTAGGGCTTATTTATATACTTATTTTCTACACTTGTTTTGACAAGAAATCAGAGCGCGTAGAAGAAATCTTGCTGATAGACATTAAACCTGGTTGGAAAAAGGGCACAAAAATCACTTTTCGGGGAAAAGGAAACCATCTACCAGGATCTCGTCCAACTGATCTAATCTTTGTGGTGAAGGAGACACCACATGTTTTATTCAAAAGGGATGGACGCGATTTGGTAATGACCCAAAAGATATCACTTCTAGAAGCTCTTGTTGGAACGACTCTCAACATAACAACCTTGGATGGAAGAGAAATCATGGTTAAGGTGACTGATATTGTAACGCCACAATATGAAAAGGTGGTTTCTGATGAAGGTATGCCACGTAAGGATCCAAGTAGGAAAGGAAAGCTTAGAATCAAGTTTCATATTGAGTATCCATCGATGCTGACTTCCCAACAAAAGCTTGAAGTAAGAAGGATTTTGCGTAATGCTGCATATAATTAA | 837 | 0.3644 | MGTDNYYKILKVNHDATYEELTNSFENLSLKWYPGKIKNIKKIYEAYDVLRNPKKPEIYDKYGKYPVNLDGFNDEYGDGNNFSAGAVKKELYCTLEELYSGCRKQLTVPRTVCDGLGLIYILIFYTCFDKKSERVEEILLIDIKPGWKKGTKITFRGKGNHLPGSRPTDLIFVVKETPHVLFKRDGRDLVMTQKISLLEALVGTTLNITTLDGREIMVKVTDIVTPQYEKVVSDEGMPRKDPSRKGKLRIKFHIEYPSMLTSQQKLEVRRILRNAAYN | 278 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Trre9g02504 | 278 | SUPERFAMILY | Chaperone J-domain | 3 | 84 | IPR036869 | - | |
| Trre9g02504 | 278 | Pfam | DnaJ domain | 5 | 60 | IPR001623 | - | |
| Trre9g02504 | 278 | SUPERFAMILY | HSP40/DnaJ peptide-binding domain | 90 | 179 | IPR008971 | GO:0006457|GO:0051082 | |
| Trre9g02504 | 278 | SMART | dnaj_3 | 4 | 55 | IPR001623 | - | |
| Trre9g02504 | 278 | PRINTS | DnaJ domain signature | 7 | 25 | IPR001623 | - | |
| Trre9g02504 | 278 | PRINTS | DnaJ domain signature | 35 | 55 | IPR001623 | - | |
| Trre9g02504 | 278 | PRINTS | DnaJ domain signature | 55 | 74 | IPR001623 | - | |
| Trre9g02504 | 278 | Pfam | DnaJ C terminal domain | 88 | 257 | IPR002939 | - | |
| Trre9g02504 | 278 | ProSiteProfiles | dnaJ domain profile. | 5 | 63 | IPR001623 | - | |
| Trre9g02504 | 278 | Gene3D | - | 179 | 258 | - | - | |
| Trre9g02504 | 278 | Gene3D | - | 84 | 177 | - | - | |
| Trre9g02504 | 278 | FunFam | Dnaj homolog subfamily b member | 84 | 177 | - | - | |
| Trre9g02504 | 278 | SUPERFAMILY | HSP40/DnaJ peptide-binding domain | 182 | 265 | IPR008971 | GO:0006457|GO:0051082 | |
| Trre9g02504 | 278 | Gene3D | DnaJ domain | 1 | 75 | IPR036869 | - | |
| Trre9g02504 | 278 | PANTHER | DNAJ HOMOLOG SUBFAMILY C MEMBER | 1 | 272 | - | - | |
| Trre9g02504 | 278 | FunFam | DnaJ subfamily B member 13 | 179 | 258 | - | - | |
| Trre9g02504 | 278 | CDD | DnaJ_C | 90 | 260 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Trre9g02504 | Trre-Chr9 | 29904207 | 29906166 | Wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Trre9g02504 | K09510 | - | gmx:100778440 | 295.434 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Trre9g02504 | 9 | 29904207 | 29906166 | Trre9g02504 | 9 | 29904207 | 29906166 | ECH |