Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g02368 ATGGCCACCACCAACACTCAACTTATCCTCTCATCACTCCAGCTTCGCCACCACCATTCTTTTTCTCTCCTCCCAACTCCAACTACTTTCCCATTCTCTCTCCTCCGTTATTCTTCTCTCTTTCACTCCTTCAATTTCCGCACCGCCATCTCCCTCAAACAAAACCTCTCCTTCTCTCGCCATCCCGACGACGACAACGACGAAGAAGAAGAAGAAGAAGAAGAAGAAGACGAAGAGAAAGATGAAGAAGAAGATGATGAAGATATCGCGGCTGATGAATACGAAGATGATGTTGTATCCGGTGAAGCTTCGGATGAAGATGAAGTGGTTGATGTCGATGATGAATTCGCTCGTTATGATGATGGATTCAAATGGAAGAGAGTTGAAAATCTTTGTAATGAAGTTAAAGAGTTTGGTGTTGGAATTATTGATTATGATGAACTTGCTTCTGTTTATGATTTCCGAATCGATAAGTTTCAGCGGCAAGCTATTGAAGCTTTTCTGAGAGGTTCGTCCGTGGTGGTTTCTGCTCCGACGAGTAGTGGAAAGACGTTGATTGCAGAGGCTGCAGCTGTTGCTACCGTGGCTAGGGGACGGCGGTTATTCTACACGACTCCTCTCAAAGCATTGTCTAATCAGAAGTTTCGCGAATTTCGGGAAACTTTTGGTGACAATAATGTTGGCCTTCTTACGGGTGATTCTGCTGTCAACAAGGATGCTCAGGTTTTGATTATGACCACGGAGATATTACGCAACATGTTGTATCAGAGTGTTGGTAATGTTTCTTCTGGAAGTGGACTTGTCAGTGTTGATGTCATTGTTTTGGATGAAGTTCATTACCTTAGTGACATATCTCGCGGTACAGTTTGGGAAGAAGTTGTTATTTATTGCCCAAAAAAAGTTCAACTTATTTGTCTCTCCGCAACCGTTGCAAATCCAGATGAGTTGGCTGGTTGGATTGGTCAGATTCATGGTGGAACAGAATTGGTAACATCATCGAAACGCCCAGTTCCTCTGAATTGGCATTTCTCTTTGAAGAATTCCCTATTACCACTTCTTGACAAGAAGGGAACACAAATGAACAGGAAGTTGTCACTCAATTATTTACAACTTCAAGCTGCAGAAGCTAAACCTTACAAGGACGATTGGCCTAGAAGAAGGAATTCCAGGAGACGTGGAACTCGCACAAGCTATGATGGCAATGATAGCATGTTGGAAGAACGTTCTCTTTCAAAGAATGATATAAATGCAATTCGTCGATCACAAGTTCCTCAAATAATCGATACGTTATGGCACCTTCAGTCTAGGGATATGCTTCCAGCTGTTTGGTTTATTTTTAGCAGGAAAGGTTGCGATGCAGCTGTGCAATATGTTGAAGATTGCAAACTTTTAGACGAGTGTGAAGCAAGTGAGGTTCAACTAGCCTTGAAGAAGTTCCGCATTCAGTATCCTGATGCTGTCCGAGAAACAGCTGTGAAAGGACTTTTGCAAGGGGTTGCTGCGCATCATGCTGGATGTCTACCTTTGTGGAAGGCTTTCATAGAAGAATTGTTTCAAAGAGGACTTGTCAAGGTTGTTTTTGCTACTGAAACCCTGGCTGCTGGAATCAATATGCCTGCTAGAACAGCTGTTATTTCATCCCTCAGCAAAAGAAGTGATAGCGGGCGCACCCTATTGACCTCAAATGAACTGCTTCAGATGGCTGGGCGTGCTGGACGTAGAGGCATTGATGAAAGTGGTCATGTGGTCCTTGTCCAAACTCCTAGTGAAGGTGCTGAAGAGTGCTGCAAGGTGCTTTTTTCTGGACTTGAGCCTCTGGTGTCACAGTTTACTGCTTCATATGGAATGGTTTTGAATCTTCTTGGTGGTGGGAAAGCCATTCGTAGGTCAAATACATCAGATGAAACGAAACCTTCCTCGGGGAAAACTTTGGATGAAGCTAGGAAGTTAATTGAGCAAAGTTTTGGAAATTATGTTAGTAGCAGTGTTATGCTGGCTGCTAAAGAGGAACTTAAGAGAATTGAAAAAGAAATTCAGTTGTTGATGTCAGAAATCACTGATGAAGCCATAGATAGAAAAAGTAGGAAGGCTTTACCACAGCATCAATACAAGGAGATTTCAACATTACAGGAAGATTTAAGGGCAGCAAGACGTGTTCGGGCTGAACTGCGAAAACAGAGAGAAGCAGAGAGAATATCTGCCTTGAAACCTTTATTGGAAGAGTCCGAAAATGAACATTTACCATTTTTGTGCTTGCAGTATAGTGATTCTGAAGGAGTTCAACATTCAATTCCTGCTGTGTTTTTGGGGAAGGTCAACTCCCTCGGTGCTTCAAAACTCAAAAACATGATCAGTTCTGTTGATTCTTTTGCATTAAATTCAGCATATGCTGATTCTGAATTGAATGAAGATCCTGTACCATCTTATCACGTAGCTCTTGGTTCAGATAACTCTTGGTATCTATTTACAGAAAAGTGGATCAAAACAGTATATGAGACAGGCCTTCCTGATGTTCCTTTAGCTCAAGGAGATACACGGCCTCGAGAAATTATGAGTGGTCTCCTTGATAAGGAGGACATGAAGTGGGATAACCTTGCTCAGTCTGAACACGGTGATTTATGGTTCACGGAAGGAGCTCTGGAGACATGGTCGTGGAGCTTGAATGTTCCTGTTTTGAGCAGCTTCTCTGAAAATGATGAGGTTCTACTGAAATCTCAAGCATACAGAGATGCATCTGAACGATACAGGGAGCAAAGAAAAAAAGTCGCACGTTTGAAAAAAACTATATCTCGTGCTGAAGGCTATAGAGAATATAAAAAAATCCTAGACACAGTCAAGTTCACCGAGGAGAAAATCAAGCGAATGAAGACTAGATCCAAACGTTTGACTAATCGGATAGAACAAATTGAACCCTCAGGTTGGAAGGAGTTTATGAACGTTAGCAATGTCATACGTGAGACCAGAGCTTTAGATATTAACACACAAGTCATATTTCCGTTAGGGGAAACTGCTTCAGCAATTCGTGGAGAAAATGAGCTATGGCTTGCAATTGTTCTTCGTAGTAAAATTTTACTAGAATTAAAACCTGCACAACTTGCTGCGGTGTGTGCAGGTTTGGTATCTGAGGGCATAAAAGTCAGACCATGGAAGAACAACAATTACATTTATGAGCCTTCTTCAACTGTAGCCAATGTCATAGAGTTATTGGATGAACAAAGAAGTGCCCTATTGGCAGTTCAGGAGAAACATGGAGTAACAATTTCTTGCTGTTTGGATAGCCAGTTTTGTGGTATGGTTGAAGCCTGGGCTTCTAGGTTGACATGGAAAGAAATAATGATGGATTGTGCAATGGATGATGGCGATCTTGCTCGTCTTCTTCGACGGACCATTGATCTATTAGTTCAGATTCCTAAATTGCCGGATATTGATCAATCGTTGCAGCGGAATGCAAGAGCTGCTTCTGATGTCATGGACCGACCTCCAATAAGTGAACTTGGTGGGTAG 3504 0.4218 MATTNTQLILSSLQLRHHHSFSLLPTPTTFPFSLLRYSSLFHSFNFRTAISLKQNLSFSRHPDDDNDEEEEEEEEEDEEKDEEEDDEDIAADEYEDDVVSGEASDEDEVVDVDDEFARYDDGFKWKRVENLCNEVKEFGVGIIDYDELASVYDFRIDKFQRQAIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVARGRRLFYTTPLKALSNQKFREFRETFGDNNVGLLTGDSAVNKDAQVLIMTTEILRNMLYQSVGNVSSGSGLVSVDVIVLDEVHYLSDISRGTVWEEVVIYCPKKVQLICLSATVANPDELAGWIGQIHGGTELVTSSKRPVPLNWHFSLKNSLLPLLDKKGTQMNRKLSLNYLQLQAAEAKPYKDDWPRRRNSRRRGTRTSYDGNDSMLEERSLSKNDINAIRRSQVPQIIDTLWHLQSRDMLPAVWFIFSRKGCDAAVQYVEDCKLLDECEASEVQLALKKFRIQYPDAVRETAVKGLLQGVAAHHAGCLPLWKAFIEELFQRGLVKVVFATETLAAGINMPARTAVISSLSKRSDSGRTLLTSNELLQMAGRAGRRGIDESGHVVLVQTPSEGAEECCKVLFSGLEPLVSQFTASYGMVLNLLGGGKAIRRSNTSDETKPSSGKTLDEARKLIEQSFGNYVSSSVMLAAKEELKRIEKEIQLLMSEITDEAIDRKSRKALPQHQYKEISTLQEDLRAARRVRAELRKQREAERISALKPLLEESENEHLPFLCLQYSDSEGVQHSIPAVFLGKVNSLGASKLKNMISSVDSFALNSAYADSELNEDPVPSYHVALGSDNSWYLFTEKWIKTVYETGLPDVPLAQGDTRPREIMSGLLDKEDMKWDNLAQSEHGDLWFTEGALETWSWSLNVPVLSSFSENDEVLLKSQAYRDASERYREQRKKVARLKKTISRAEGYREYKKILDTVKFTEEKIKRMKTRSKRLTNRIEQIEPSGWKEFMNVSNVIRETRALDINTQVIFPLGETASAIRGENELWLAIVLRSKILLELKPAQLAAVCAGLVSEGIKVRPWKNNNYIYEPSSTVANVIELLDEQRSALLAVQEKHGVTISCCLDSQFCGMVEAWASRLTWKEIMMDCAMDDGDLARLLRRTIDLLVQIPKLPDIDQSLQRNARAASDVMDRPPISELGG 1167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g02368 1167 Gene3D - 336 606 IPR027417 -
Trre9g02368 1167 Coils Coil 664 684 - -
Trre9g02368 1167 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 164 328 IPR014001 -
Trre9g02368 1167 Pfam DEAD/DEAH box helicase 159 311 IPR011545 GO:0003676|GO:0005524
Trre9g02368 1167 MobiDBLite consensus disorder prediction 64 107 - -
Trre9g02368 1167 PANTHER ATP-DEPENDENT RNA AND DNA HELICASE 52 1159 - -
Trre9g02368 1167 MobiDBLite consensus disorder prediction 57 107 - -
Trre9g02368 1167 SMART helicmild6 489 575 IPR001650 -
Trre9g02368 1167 Gene3D - 946 1159 - -
Trre9g02368 1167 FunFam ATP-dependent RNA helicase 119 335 - -
Trre9g02368 1167 FunFam DExH-box ATP-dependent RNA helicase DExH15 chloroplastic 949 1159 - -
Trre9g02368 1167 Pfam DSHCT (NUC185) domain 996 1162 IPR012961 -
Trre9g02368 1167 CDD SF2_C_Ski2 405 587 - -
Trre9g02368 1167 Coils Coil 706 726 - -
Trre9g02368 1167 Coils Coil 65 86 - -
Trre9g02368 1167 SMART ultradead3 152 342 IPR014001 -
Trre9g02368 1167 Coils Coil 908 928 - -
Trre9g02368 1167 Gene3D - 117 335 IPR027417 -
Trre9g02368 1167 MobiDBLite consensus disorder prediction 380 403 - -
Trre9g02368 1167 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 422 621 IPR001650 -
Trre9g02368 1167 SMART DSHCT_2 992 1166 IPR012961 -
Trre9g02368 1167 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 164 588 IPR027417 -
Trre9g02368 1167 Coils Coil 945 965 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g02368 Trre-Chr9 27367140 27374514 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g02368 K26077 - gmx:100780908 1733.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre9g02368 9 27367140 27374514 Trre9g02368 9 27367140 27374514 ECH