Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g02355 ATGGCTCTATCACGTTTAGCTTCATCTTCAACCGTCGGATCCAATCTGATCAAACCCATCTCCGCCGCCTTATCTCTTCACCGTCCGATATCCTCCGACACAACCACCACTCTCACAATCGAAACCTCCCTCCCTTTCACCGCCCACAACTGTTCCCCACCGTCCACCTCCGTCACCACAACCCCCTCCGAACTTCTCTCCTTCTTCCGCACCATGGCCTTAATGCGTCGAATGGAAATCGCCGCCGATTCACTCTACAAATCAAAACTCATCCGAGGTTTCTGCCACCTCTACGACGGCCAAGAAGCCGTTGCAGTCGGTATGGAAGCATCAACAACTAAAAAAGACTGTATAATTACTGCTTACCGTGATCACTGTACTTTTCTCGGCCGCGGCGGAACCCTACTTGAAGTTTATTCCGAACTTATGGGAAGAATTGATGGGTGTTCTAAAGGGAAAGGTGGTTCAATGCATTTTTATAAGAAAGATTCTGGTTTTTATGGTGGTCATGGAATTGTTGGTGCTCAAGTTCCACTTGGTTGTGGTTTGGCTTTTGGTCAGAAATATTTGAAAGATGAAAGTGTTACTTTTGCTTTGTATGGTGATGGTGCTGCTAATCAGGGGCAACTTTTTGAAGCTCTTAATATTGCTGCTCTTTGGGATCTTCCTGCTATTTTGGTTTGTGAAAATAATCATTATGGAATGGGGACTGCTGAATGGAGAGCTGCTAAGAGTCCTGCTTATTATAAGAGAGGAGATTATGTTCCCGGGTTGAAGGTAGATGGCATGGATGTTCTTGCTGTGAAACAAGCTGTTAAATTTGCAAAGGAGCATGCTTTGCAGAATGGGCCCCTTATTCTTGAAATGGACACTTACAGATACCATGGTCACTCTATGTCTGATCCTGGAAGCACATACCGAACACGTGATGAAATTTCTGGTGTGAGACAGGAGCGTGATCCAATTGAGAGAGTAAGAAAGCTGTTACTGTCTCATGACATTGCTACCGAAAAGGAGCTAAAGGACACTGAAAAAGAAGTCAGAAAAGAAGTTGATGAAGCTATTGCTAAAGCAAAGGAGAGTCCAGCGCCAGAACCATCTGATCTATTTACCAATGTATATGTTAAAGGATTCGGGGTTGAGGCATTTGGTGCTGATAGGAAAGAAGTAAGAGCTACTTTACCATAA 1188 0.4436 MALSRLASSSTVGSNLIKPISAALSLHRPISSDTTTTLTIETSLPFTAHNCSPPSTSVTTTPSELLSFFRTMALMRRMEIAADSLYKSKLIRGFCHLYDGQEAVAVGMEASTTKKDCIITAYRDHCTFLGRGGTLLEVYSELMGRIDGCSKGKGGSMHFYKKDSGFYGGHGIVGAQVPLGCGLAFGQKYLKDESVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPAYYKRGDYVPGLKVDGMDVLAVKQAVKFAKEHALQNGPLILEMDTYRYHGHSMSDPGSTYRTRDEISGVRQERDPIERVRKLLLSHDIATEKELKDTEKEVRKEVDEAIAKAKESPAPEPSDLFTNVYVKGFGVEAFGADRKEVRATLP 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g02355 395 CDD TPP_E1_PDC_ADC_BCADC 68 358 - -
Trre9g02355 395 Pfam Dehydrogenase E1 component 71 366 IPR001017 GO:0016624
Trre9g02355 395 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 59 376 IPR029061 -
Trre9g02355 395 Gene3D - 26 389 - -
Trre9g02355 395 PANTHER PYRUVATE DEHYDROGENASE E1 COMPONENT, ALPHA SUBUNIT BACTERIAL AND ORGANELLAR 33 377 - -
Trre9g02355 395 FunFam Pyruvate dehydrogenase E1 component subunit alpha 27 388 - -
Trre9g02355 395 Coils Coil 337 357 - -
Trre9g02355 395 NCBIfam pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha 63 375 IPR017597 GO:0004739|GO:0006086|GO:0043231
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g02355 Trre-Chr9 27175021 27179779 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g02355 1 395 Acyl Lipid Metabolism Gene Families AT1G24180 78.338 0.0 656
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g02355 K00161 - zju:107428751 691.804
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre9g02355 9 27175021 27179779 Trre9g02355 9 27175021 27179779 ECH