Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g02313 ATGGGACTTCTTCAATGTCCCTTATGTTTCTACTCACAAAACCAACAAAAACATCAAAAAACAGAACCTCACTCTCATGATCATATTCATTCAGAATCATCAACTTCTTCATCAATTTCTTCACAACCAAGTCTTCCTTCTGTTCCTTCTCTCTCTTCTCAACAATCTCAAACCACACATCACAAACTTCTAACAACAATCAACGGTCACTCTTCTCCCATCTTCTCCCTCACTCTTCACTCCAAATTCATCTACAGTGGCTCTTCCAATAGTGAAATAAGAAGATTTGATAAATACCCTTTTGCCCTTCAATCCTCAAATAACACAAACAACTTGGTTTCAATTAGTCATGGATCAAAATCAACCATTAAGTCAATGATTGTTGTTAATGATATGTTATTTAGTGCTCATCAAGATCACAAAATCCGGGTTTGGAAAATCGAAACAACGACAAAAACAGCAACAATTACTGATACTAATCATGATCAGAGACTATTCAAATGTATAGCAACACTTCCAACATTCAACGATCGATTTTCGAAGCTTTTTTCGTCAAAAAACTATGTCGAAGTTCGAAGACATAAGAAGTGTACATGGGTGAATCATGTTGATGCTGTTTCTTCTCTTGCTGCTTCAAAAGATGGGTTTTTTCTTTACTCTGCTTCATGGGATAGAACATTCAAAATTTGGAGAGTTTCTGATTTTAAGTGTTTAGAGTCAGTGAAAAATGCACATGAAGATGCAATCAATGCAATTGTTGTTTCATCTGACGGAGTTGTTTATACTGGTTCAGCTGATAAAAAGATCAAAATTTGGAAGGAAAAAAATCATGAAGGTGAAAAAAAGCATTTTTTGATAGGAACATTGGAGAAACATAAATCATCTGTGAATGCTTTAGCACTTAATAAAAATGGGTCAATTTTGTACTCAGGTGCTTGTGATAGATCAATTTTAGTTTGGGAAAAAATGGACAAAAATGTTGAAAATTGTTCTGAACTGGGTCAAGGTCCGATGATTCTGGTTGGCGCCCTTCGAGGGCATACTAAGGCTATATTGTGTTTGGTTGCGATGGATAATTTGGTTTGTAGTGGATCAACTGATAATAGTGTTAGGATATGGAAAAGAGGAATTGATGAAAAAAGTTATACTTGTTTGGCTGTTTTGCAAGGTCATAAAAAACCAGTGAAGTGTTTGGCAATGGCAAATGATTCCAAAAGAGGTAAGAATGGTGGGGATGATGATGATCATGATTGTAGTTCTTATCTTGTTTATAGTGGTAGTCTTGATTGTGACATTAAAGTTTGGCAAATATGTGCTCCTTTAATTTGA 1329 0.3514 MGLLQCPLCFYSQNQQKHQKTEPHSHDHIHSESSTSSSISSQPSLPSVPSLSSQQSQTTHHKLLTTINGHSSPIFSLTLHSKFIYSGSSNSEIRRFDKYPFALQSSNNTNNLVSISHGSKSTIKSMIVVNDMLFSAHQDHKIRVWKIETTTKTATITDTNHDQRLFKCIATLPTFNDRFSKLFSSKNYVEVRRHKKCTWVNHVDAVSSLAASKDGFFLYSASWDRTFKIWRVSDFKCLESVKNAHEDAINAIVVSSDGVVYTGSADKKIKIWKEKNHEGEKKHFLIGTLEKHKSSVNALALNKNGSILYSGACDRSILVWEKMDKNVENCSELGQGPMILVGALRGHTKAILCLVAMDNLVCSGSTDNSVRIWKRGIDEKSYTCLAVLQGHKKPVKCLAMANDSKRGKNGGDDDDHDCSSYLVYSGSLDCDIKVWQICAPLI 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g02313 442 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 289 321 - -
Trre9g02313 442 Gene3D - 176 439 IPR015943 GO:0005515
Trre9g02313 442 ProSiteProfiles Trp-Asp (WD) repeats profile. 199 240 IPR001680 GO:0005515
Trre9g02313 442 PRINTS G protein beta WD-40 repeat signature 260 274 IPR020472 -
Trre9g02313 442 PRINTS G protein beta WD-40 repeat signature 361 375 IPR020472 -
Trre9g02313 442 PRINTS G protein beta WD-40 repeat signature 218 232 IPR020472 -
Trre9g02313 442 MobiDBLite consensus disorder prediction 32 60 - -
Trre9g02313 442 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 199 233 - -
Trre9g02313 442 CDD WD40 63 436 - -
Trre9g02313 442 SUPERFAMILY WD40 repeat-like 60 437 IPR036322 GO:0005515
Trre9g02313 442 MobiDBLite consensus disorder prediction 17 60 - -
Trre9g02313 442 ProSiteProfiles Trp-Asp (WD) repeats profile. 344 374 IPR001680 GO:0005515
Trre9g02313 442 Gene3D - 10 175 IPR015943 GO:0005515
Trre9g02313 442 SMART WD40_4 282 321 IPR001680 GO:0005515
Trre9g02313 442 SMART WD40_4 192 231 IPR001680 GO:0005515
Trre9g02313 442 SMART WD40_4 234 273 IPR001680 GO:0005515
Trre9g02313 442 SMART WD40_4 60 97 IPR001680 GO:0005515
Trre9g02313 442 SMART WD40_4 381 436 IPR001680 GO:0005515
Trre9g02313 442 SMART WD40_4 337 374 IPR001680 GO:0005515
Trre9g02313 442 SMART WD40_4 109 146 IPR001680 GO:0005515
Trre9g02313 442 FunFam BnaA09g28200D protein 189 277 - -
Trre9g02313 442 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 344 374 - -
Trre9g02313 442 Pfam WD domain, G-beta repeat 200 230 IPR001680 GO:0005515
Trre9g02313 442 Pfam WD domain, G-beta repeat 341 374 IPR001680 GO:0005515
Trre9g02313 442 Pfam WD domain, G-beta repeat 286 320 IPR001680 GO:0005515
Trre9g02313 442 Pfam WD domain, G-beta repeat 383 435 IPR001680 GO:0005515
Trre9g02313 442 Pfam WD domain, G-beta repeat 236 273 IPR001680 GO:0005515
Trre9g02313 442 ProSiteProfiles Trp-Asp (WD) repeats profile. 242 282 IPR001680 GO:0005515
Trre9g02313 442 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 23 437 IPR045182 -
Trre9g02313 442 ProSiteProfiles Trp-Asp (WD) repeats profile. 289 321 IPR001680 GO:0005515
Trre9g02313 442 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 242 273 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g02313 Trre-Chr9 26260617 26261945 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g02313 117 377 Acyl Lipid Metabolism Gene Families AT3G18860 25.368 1.35e-08 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g02313 - - cam:101511687 602.823
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre9g02313 9 26260617 26261945 Trre9g02313 9 26260617 26261945 ECH