Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g02311 ATGTCTAATAGTTCGAGGGGTCGAGTTACCATTACTCTTGGACGCAGTGGTCAGGTTGTGAAGAGGGACGTATCTGCTGGGGATGTTGCTTACTCTTCTTCTATGTCTTCAGCTGGGACTAAGCGGTCTGTGAGAGACAGGATTGGAAGTAATGGAGATAATTCCATGTGGCATGGAAATGGACTCAGCGGAAATAAAAGACATCGAGGAGATGTAAGCATGCAAAATGGACTGGATGGTAATGATCTCCGAATGAAACTGATACAAAAAAGTGCATCGAGGAGGACTGAAAGTAATGATGGCAGTAAGAGGAATATCGATCTCCGTGAAAAATTGTCAAAGACAGCTCACCCTCCAACAAACAGTTTCAATCCAAAGCAGCGCATGCCTGAACCAAGGGAAACAAGCATGTTTAGACCAGTTTCCTCAGCTAGAAGTTCTGATGATATAATGCGTATGGAATCGATGAGAAGCTCATACTCTCCTTGGACACTGGATCAAATTCGGAAAAGATCACCAGATGGGTTTCCAAGTACTTCCAGGGGGATTTCCCCCCAAAGGAATGTTGGAGACCTACAGGGAAGGCCAGTAAACAGGACATATGATGGCGTCAGACCAGTTCCATATGCAGGCAGGGATGTACATGAAACTTCAAGGCCTCCAAGTGCTGCACCTTCATCTTTCATGTCACGACCCACAATATCTACATTGCCTCCGGTAACTGCTAAGCCTGTAGCATCTCATCCTAGACAACTTCCTCCATCAAGCAGTGTTCCACAAAGGGCTCCATTTGTGGGCAATGAACAGCAACCACAAACTGTTGATGGCCTGTTACTTGCACTGGGACTACAAAAATATCAAATTCTCTTCAAGGCCGAGGAAGTGGATATGACTGCATTGAAGCAGATGGGAGAAAATGACCTCAAAGAGCTTGGAATTCCTATGGGTCCAAGGAAAAAACTTCTTCTTGCACTCATGCCTCGTAAACGTCAACAGTGA 999 0.4535 MSNSSRGRVTITLGRSGQVVKRDVSAGDVAYSSSMSSAGTKRSVRDRIGSNGDNSMWHGNGLSGNKRHRGDVSMQNGLDGNDLRMKLIQKSASRRTESNDGSKRNIDLREKLSKTAHPPTNSFNPKQRMPEPRETSMFRPVSSARSSDDIMRMESMRSSYSPWTLDQIRKRSPDGFPSTSRGISPQRNVGDLQGRPVNRTYDGVRPVPYAGRDVHETSRPPSAAPSSFMSRPTISTLPPVTAKPVASHPRQLPPSSSVPQRAPFVGNEQQPQTVDGLLLALGLQKYQILFKAEEVDMTALKQMGENDLKELGIPMGPRKKLLLALMPRKRQQ 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g02311 332 Coils Coil 331 332 - -
Trre9g02311 332 MobiDBLite consensus disorder prediction 31 61 - -
Trre9g02311 332 MobiDBLite consensus disorder prediction 250 269 - -
Trre9g02311 332 SUPERFAMILY SAM/Pointed domain 271 326 IPR013761 -
Trre9g02311 332 MobiDBLite consensus disorder prediction 172 269 - -
Trre9g02311 332 Gene3D - 272 332 IPR013761 -
Trre9g02311 332 PANTHER SCP160 126 328 - -
Trre9g02311 332 ProSiteProfiles SAM domain profile. 269 332 IPR001660 GO:0005515
Trre9g02311 332 MobiDBLite consensus disorder prediction 31 149 - -
Trre9g02311 332 SMART SAM_4 266 331 IPR001660 GO:0005515
Trre9g02311 332 Pfam SAM domain (Sterile alpha motif) 270 325 IPR001660 GO:0005515
Trre9g02311 332 MobiDBLite consensus disorder prediction 115 129 - -
Trre9g02311 332 MobiDBLite consensus disorder prediction 173 193 - -
Trre9g02311 332 MobiDBLite consensus disorder prediction 88 114 - -
Trre9g02311 332 MobiDBLite consensus disorder prediction 220 237 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g02311 Trre-Chr9 26210902 26217725 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g02311 267 325 Glycosyltransferase AT3G07170 55.932 3.38e-15 71.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g02311 - - gmx:100797199 508.449
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre9g02311 9 26210902 26217725 Trre9g02311 9 26210902 26217725 ECH