LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre9g02219	ATGAATCCGTTCTCTTCAGGAACGCGTTTGAGGGACATGATTCGGGCAATACGTGCATGCAAGACTGCAGCAGAAGAGCGTGGTGTTGTAAGAAAAGAATGTGCAGCCATTCGTGCTTCAATAAATGAAAATGATCAAGATTACAGGCATCGTAATATGGCTAAGCTAATGTTCATTCATATGCTTGGGTACCCGACACATTTTGGTCAAATGGAGTGCCTCAAGTTGATAGCATCCCCAGGATTTCCGGAGAAGAGAATAGGTTATCTTGGCCTCATGTTGCTTCTTGATGAAAGACAAGAAGTTCTAATGCTGGTCACCAATTCTTTAAAACAAGATCTTAATCATACAAATCAGTATATAGTGGGACTTGCACTCTGCGCTTTAGGAAACATTTGTTCAGCAGAAATGGCTCGTGATCTTGCACCAGAGGTTGAGAGATTGCTACAATTTCGTGATCCCAATATTCGGAAGAAGGCAGCATTATGCTCTATACGGATCATAAAAAAAGTTCCAGACTTGGCAGAAAATTTTATCAATCCTGCTACTTCCTTACTTAGGGAGAAACACCATGGAGTTTTGATCACTGGGGTTCAGCTTTGTACAGATCTGTGTAAAACTAGCACCGAAGCTCTTGAACATATTAGGAAGAAATGCACAGATGGTTTGGTCAGAACTCTCAGAGATCTAGCGAACAGCCCTTATTCACCAGAGTATGATATTGCTGGCATCACAGATCCATTTCTCCACATTAGGTTGCTTAAGCTTTTGCGAGTGTTAGGTGAAGGTGACGCTGATGCTAGTGACTCTATGAATGATATACTCGCCCAGGTGGCTACAAAAACCGAGTCAAATAAAGTTGCAGGGAATGCCATTTTATATGAGTGTGTTCAAACAATAATGAGCATTGAAGACAATGGTGGTTTACGCGTACTAGCCATCAATATCCTCGGAAGATTCTTGTCAAACCGTGACAACAATATCAGATACGTGGCACTAAATATGCTAATGAGGGCTGTAACTGCTGATGCTCAGGCAGTGCAGAGGCACCGTGCAACAATTCTAGAATGTGTAAAGGATTTAGATGCTTCAATTCGGAAAAGAGCCCTTGAACTTGTATATGTTCTGGTAAATGAAACTAATGTGAAGCCATTAGTGAAAGAGCTTGTAGATTATCTGGAAGTCAGTGATCTTGATTTCAGAGAGGACCTTACTACCAAAATATGCTCCATAGTTGCAAAATTTTCCCCAGAGAAGATCTGGTACATTGATCAGATGCTAAAGGTTCTGTCTGAGGCTGGAAATTTTGTAAAAGATGAAGTGTGGTATGCCTTAATTGTTGTGGTAAGCAATGCTTCTGAGCTTCATGGATATACAGTAAGAGCATTATACAGGGCATTTCAAACATCTGCTGAACAGGAAACTCTAGTTCGAGTTACAGTGTGGTGCATTGGGGAGTATGGTGACATGCTAGTCAATAATATTGGAATGCTTGACATAGAAGATTCAATAACAGTGACTGAGTCAGATGCAGTGGATGTTGTAGAGATTGCTATAAAACGCCATGCATCAGATCTTACCACAAAAGCAATGGCTTTGGTTGCCTTATTAAAGCTCTCTTCCCGTTTCCCGTCTTGTTCAGAGAGGATCGGGGAAATTATTGTACAGTTCAAAGGGAATCTTGTGCTAGAATTGCAGCAGAGAGCTATTGAGTTCAATTCAATTATTTCTAAGCACCAAAATATTAGATCTACTCTTGTAGAAAGGATGCCAGTTTTGGATGAGGCTACTTTCATAGGTAGGAGGGCTGGGTCTTTGCCAGGTGCTGCTTCTACAGCAACCACGCCTTCAGTTAGTCTCCCGAATGGGGTAGCCAAACCTGCCGCTCCTCTTGTAGATCTACTTGATCTAAGTTCAGATGATCCCGTAGCACCTAGCTCTTCTGGTGGCGATTTTCTTCAGGATCTTCTTGGTGTTGATCTGTCGCCAGCATCACAGCAATCTGGTGCTGCTGATCAAGCATCAAAAAGTGGCACAGATGTTCTTTTGGATCTCTTATCTATCGGATCACCTGCCCAGAGCGACTCATCTACAGTAGACATATTATCCTCAAATACTAGTAACAAAGCACCTGTTTCACCATTGGATGATCTCTCATCACTTTCACTTTCTTCAAGATCTACATCAAATGCCGGTCCTATGATGGATTTATTGGGTGGTATTTCCTCCAGCCCACCAACAGAAAACAATGGACCAGTTTATCCATCTGTAACTGCTTTTGAGAGCAGCTCCTTGAGGTTGACATTCAATTTCACAAAACAACCGGGAAACCCACAAACAACAGCTATCCAGGCTACCTTTACGAATTTGTCCTCCAATACATATACTGATTTTGTTTTCCAGGCAGCCGTTCCTAAGTTTCTTCAATTGCACTTAGATCCAGCTAGTGGCAATACTCTCCCTGCTACTGGAAATGGGTCTGTCACGCAAACTTTGAGAGTTACTAATAGCCAACATGGAAAGAAATCTCTTGTCATGCGCATAAGGATAGCATACAAGATAAATGGCAAGGATACACTGGAGGAGGGGCAAATCAGTAATTTTCCTCGTGATTTATGA	2619	0.4189	MNPFSSGTRLRDMIRAIRACKTAAEERGVVRKECAAIRASINENDQDYRHRNMAKLMFIHMLGYPTHFGQMECLKLIASPGFPEKRIGYLGLMLLLDERQEVLMLVTNSLKQDLNHTNQYIVGLALCALGNICSAEMARDLAPEVERLLQFRDPNIRKKAALCSIRIIKKVPDLAENFINPATSLLREKHHGVLITGVQLCTDLCKTSTEALEHIRKKCTDGLVRTLRDLANSPYSPEYDIAGITDPFLHIRLLKLLRVLGEGDADASDSMNDILAQVATKTESNKVAGNAILYECVQTIMSIEDNGGLRVLAINILGRFLSNRDNNIRYVALNMLMRAVTADAQAVQRHRATILECVKDLDASIRKRALELVYVLVNETNVKPLVKELVDYLEVSDLDFREDLTTKICSIVAKFSPEKIWYIDQMLKVLSEAGNFVKDEVWYALIVVVSNASELHGYTVRALYRAFQTSAEQETLVRVTVWCIGEYGDMLVNNIGMLDIEDSITVTESDAVDVVEIAIKRHASDLTTKAMALVALLKLSSRFPSCSERIGEIIVQFKGNLVLELQQRAIEFNSIISKHQNIRSTLVERMPVLDEATFIGRRAGSLPGAASTATTPSVSLPNGVAKPAAPLVDLLDLSSDDPVAPSSSGGDFLQDLLGVDLSPASQQSGAADQASKSGTDVLLDLLSIGSPAQSDSSTVDILSSNTSNKAPVSPLDDLSSLSLSSRSTSNAGPMMDLLGGISSSPPTENNGPVYPSVTAFESSSLRLTFNFTKQPGNPQTTAIQATFTNLSSNTYTDFVFQAAVPKFLQLHLDPASGNTLPATGNGSVTQTLRVTNSQHGKKSLVMRIRIAYKINGKDTLEEGQISNFPRDL	872

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre9g02219	872	Pfam	Adaptin C-terminal domain	755	869	IPR008152	GO:0006886\|GO:0016192
	Trre9g02219	872	SUPERFAMILY	ARM repeat	25	593	IPR016024	-
	Trre9g02219	872	Gene3D	-	740	871	-	-
	Trre9g02219	872	ProSiteProfiles	Gamma-adaptin ear (GAE) domain profile.	752	869	IPR008153	-
	Trre9g02219	872	FunFam	AP-1 complex subunit gamma	742	872	-	-
	Trre9g02219	872	Pfam	Adaptin N terminal region	27	579	IPR002553	GO:0006886\|GO:0016192\|GO:0030117
	Trre9g02219	872	Gene3D	-	2	594	IPR011989	-
	Trre9g02219	872	SMART	alpha_adaptinc2	749	869	IPR008152	GO:0006886\|GO:0016192
	Trre9g02219	872	MobiDBLite	consensus disorder prediction	691	729	-	-
	Trre9g02219	872	SUPERFAMILY	Clathrin adaptor appendage domain	728	871	IPR013041	-
	Trre9g02219	872	PIRSF	AP1_gamma	6	872	IPR017107	GO:0005794\|GO:0016192\|GO:0030121
	Trre9g02219	872	PANTHER	ADAPTIN, ALPHA/GAMMA/EPSILON	11	860	-	-
	Trre9g02219	872	FunFam	AP-1 complex subunit gamma	2	594	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre9g02219	Trre-Chr9	24240549	24259032	Dispersed/Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre9g02219	K12391		-	gmx:100802164	1508.04

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Trre9g02219	9	24240549	24259032	Trre9g02219	9	24240549	24259032	ECH