Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g02213 ATGCTATGCTCTCTAATCCGTTTGCGCCGTAAACCTTCGACCTCCCTTCTTCTTCTTCATCTCACTAACTGTTACTCTTCATCTTCCATTCCTTCCTCCTCTGCCACCGCCGCCATGGTGGTTGCTCACCCTAAAGACGACGCATACCTAACCGCCACCATCCCAAAACGAATCCAATTATTCGAGACGATTCAAGCCGAACAACAGACTCGCCGTCTATCACTGTCACCGGATCCGATTAAGATCACACTCCCCGATGGAACTGTGAAAGAAGGAAAGAAATGGCAAACAACTCCGTTCGATATAGCTCGTGAAATATCTAAGAATTTAGCTAATAATGCTCTTATTGCTAAGGTCAATGATGTACTTTGGGATATGAATCGTCCTCTTGAAGAGGATGCGAAGCTTGAGATCTATAAGTTTGAAGATGATGAAGGTCGTGATACTTTCTGGCATTCTAGTGCTCATATTCTTGGACAGTCTCTTGAGACGGAGTATGGATGCAAGCTTTGCATTGGACCTTGCACTACTAGAGGAGAGGGATTCTATTATGATGCGTTTTATGGCGAATTGAGTCTGAATGAGGATCACTTTAAACAAATTAAAGATGGAGCATTGAAGGCTGTTAAGGATAAACAACCCTTTGAGCGCATTGAAGTGACACGTGATCAAGCGCTTAAGATATTTTCTGATAATAAATTTAAGGTTGAAATTATCAATGATTTGCCCGCTGACAAGACTATAACAGTGTACAGATGTGGACCCCTCGTTGATTTGTGTCGAGGACCGCATATTCCTAATACATCCTTTGTCAAAGCAATTGAATGTTTGAAGGCTTCGTCAGCATATTGGAGGGGGGACAAAGATAGAGAAAGTTTACAAAGAGTTTATGGCATATCTTTTCCTGATCAGAAGAGATTAACGGAATATTTGAATCGGCTTGCAGAGGCTAAAAAGTATGATCACAGGATTGTGGGGGTGAAACAGGAGCTTATTTATCATCACGAGTGGAGCCCGGGAAGCTGGTTTTTTCTTCCACACGGTGCTCGGATCTACAACAAACTCATGAACTTCATTCGAGACCAGTACAGAGACAGGGGCTATCAAGAGGTTATATCACCAAACGTCTTCAACATAGAGCTGTGGAAGACATCTGGTCATGCGGAAAAGTATAAAGATGATATGTTTGCCTTAGAGATTGACAAACAAGAGTTTGGATTGAAACCAATGAATTGCCCAGGACACTGCTTGATGTTTAAACACAGGGTTCGATCATATAGAGAACTTCCTCTTCGTTTTGCTGATTTTGGCGTTTTGCATCGAAATGAGGCCAGTGGTGCCCTGAGTGGATTAACACGTGTTAGGAGATTTCAGCAGGATGATGCACACATTTTCTGCATGGAGTCCCAGGTTAAAGATGAAGTCAGAGAAGCCTTGAACTTCATAGATTATGTCTATCAAATATTTGGGTTCACATATGAATTGAAACTTTCAACGAAGCCAGAGAATGCACTTGGAGATGCAGAAACATGGGAGAGGGCTGAAAATGCTCTTAAGGAAGCTTTGGACGAGTTTGGCAAGCCTTGGCAGTTGAATGAAGGGGATGGTGCATTTTATGGACCAAAGATAGACATTAGTGTTTCTGATGCATTGAGTAGGAAATTCCAGTGTGCAACTCTACAGCTTGACTTCCAGCTCCCTGATCGTTTTAAGCTGGAATTCTCAGCTGAGGATGAAGCCAAAATTGAGAGACCTGTTATGATACACAGAGCCATTCTAGGATCTGTTGAACGAATGTTTGCGATACTTTTAGAGCACTACAAGGGTAAATGGCCCTTCTGGCTCAGTCCTCGGCAAGCAATTTTGTGCCCCGTGTCTGAGAAATCACAAGCTTATGCACTGAAGGTACGGGATCAGATCCACCAAGCAGGGTATTACGTAGATGCTGATACAACTGATAGGAAGATTCAGAAGAAGGTACGAGAAGCTCAGTTAGCACAGTACAACTACATCTTGGTTGTTGGAGAAGAGGAAGCTAATTCTGGACAGGTGAGTGTACGAGTCAGGGACAAGGCAGACCATAGTGTCATGACTATTGAGAATTTGCTCAAACACTTCAAAGAGGAGGTTGCAGCTTTCCACTGA 2145 0.4298 MLCSLIRLRRKPSTSLLLLHLTNCYSSSSIPSSSATAAMVVAHPKDDAYLTATIPKRIQLFETIQAEQQTRRLSLSPDPIKITLPDGTVKEGKKWQTTPFDIAREISKNLANNALIAKVNDVLWDMNRPLEEDAKLEIYKFEDDEGRDTFWHSSAHILGQSLETEYGCKLCIGPCTTRGEGFYYDAFYGELSLNEDHFKQIKDGALKAVKDKQPFERIEVTRDQALKIFSDNKFKVEIINDLPADKTITVYRCGPLVDLCRGPHIPNTSFVKAIECLKASSAYWRGDKDRESLQRVYGISFPDQKRLTEYLNRLAEAKKYDHRIVGVKQELIYHHEWSPGSWFFLPHGARIYNKLMNFIRDQYRDRGYQEVISPNVFNIELWKTSGHAEKYKDDMFALEIDKQEFGLKPMNCPGHCLMFKHRVRSYRELPLRFADFGVLHRNEASGALSGLTRVRRFQQDDAHIFCMESQVKDEVREALNFIDYVYQIFGFTYELKLSTKPENALGDAETWERAENALKEALDEFGKPWQLNEGDGAFYGPKIDISVSDALSRKFQCATLQLDFQLPDRFKLEFSAEDEAKIERPVMIHRAILGSVERMFAILLEHYKGKWPFWLSPRQAILCPVSEKSQAYALKVRDQIHQAGYYVDADTTDRKIQKKVREAQLAQYNYILVVGEEEANSGQVSVRVRDKADHSVMTIENLLKHFKEEVAAFH 714
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g02213 714 Gene3D - 78 138 IPR012675 -
Trre9g02213 714 Pfam Anticodon binding domain 619 708 IPR004154 -
Trre9g02213 714 Pfam Threonyl and Alanyl tRNA synthetase second additional domain 248 297 IPR012947 GO:0004812|GO:0005524|GO:0043039
Trre9g02213 714 FunFam Threonine--tRNA ligase, cytoplasmic 78 139 - -
Trre9g02213 714 FunFam Threonine--tRNA ligase mitochondrial 1 301 429 - -
Trre9g02213 714 Gene3D Bira Bifunctional Protein; Domain 2 303 610 IPR045864 -
Trre9g02213 714 SMART tRNA_SAD_4 248 297 IPR012947 GO:0004812|GO:0005524|GO:0043039
Trre9g02213 714 Hamap Threonine--tRNA ligase [thrS]. 145 712 IPR002320 GO:0004829|GO:0005524|GO:0005737|GO:0006435
Trre9g02213 714 SUPERFAMILY Class II aaRS and biotin synthetases 321 604 IPR045864 -
Trre9g02213 714 SUPERFAMILY TGS-like 80 140 IPR012676 -
Trre9g02213 714 PANTHER THREONINE-TRNA LIGASE 51 713 - -
Trre9g02213 714 FunFam Probable threonine--tRNA ligase, cytoplasmic 435 610 - -
Trre9g02213 714 SUPERFAMILY Class II aaRS ABD-related 605 710 - -
Trre9g02213 714 ProSiteProfiles Aminoacyl-transfer RNA synthetases class-II family profile. 346 612 IPR006195 -
Trre9g02213 714 CDD ThrRS_anticodon 617 707 IPR047246 -
Trre9g02213 714 CDD TGS_ThrRS 80 145 - -
Trre9g02213 714 Gene3D - 143 301 - -
Trre9g02213 714 Pfam tRNA synthetase class II core domain (G, H, P, S and T) 399 607 IPR002314 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Trre9g02213 714 CDD ThrRS_core 321 617 IPR033728 -
Trre9g02213 714 FunFam Threonine--tRNA ligase mitochondrial 1 611 714 - -
Trre9g02213 714 ProSiteProfiles TGS domain profile. 78 140 IPR004095 -
Trre9g02213 714 NCBIfam threonine--tRNA ligase 151 709 IPR002320 GO:0004829|GO:0005524|GO:0005737|GO:0006435
Trre9g02213 714 Gene3D - 611 713 IPR036621 -
Trre9g02213 714 PRINTS Threonyl-tRNA synthetase signature 440 463 IPR002320 GO:0004829|GO:0005524|GO:0005737|GO:0006435
Trre9g02213 714 PRINTS Threonyl-tRNA synthetase signature 585 598 IPR002320 GO:0004829|GO:0005524|GO:0005737|GO:0006435
Trre9g02213 714 PRINTS Threonyl-tRNA synthetase signature 407 435 IPR002320 GO:0004829|GO:0005524|GO:0005737|GO:0006435
Trre9g02213 714 PRINTS Threonyl-tRNA synthetase signature 612 624 IPR002320 GO:0004829|GO:0005524|GO:0005737|GO:0006435
Trre9g02213 714 PRINTS Threonyl-tRNA synthetase signature 541 569 IPR002320 GO:0004829|GO:0005524|GO:0005737|GO:0006435
Trre9g02213 714 FunFam Threonyl-tRNA synthetase, mitochondrial 144 301 - -
Trre9g02213 714 SUPERFAMILY ThrRS/AlaRS common domain 143 319 IPR018163 GO:0000166
Trre9g02213 714 Pfam TGS domain 80 140 IPR004095 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g02213 Trre-Chr9 24163656 24179552 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g02213 K01868 - gmx:100812652 1256.12
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre9g02213 9 24163656 24179552 Trre9g02213 9 24163656 24179552 ECH