Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g02198 ATGAAACTCCATAAATCTTTTTTAGATCATAAAGTAACCAAGTCCTCACCTTCCCCTGCACTCTGCTGTGTGGAGACGGTGTCTCAAGATGAACAAAATTCTCATATTACAGCTTATAATTCAGGAGATGGATCCACGAACTCAGATAACGAATCTTCTTCATCAAAGACTGTGCGTGATGTACATATTTCAATGCGGTTAATGGAGGATTTTCTTGATCTTGCTAAAGAAAATACAGAAAAGGATCTGGAAACATGTGGTATACTTGGTGCCCTTCTTGAGAAAGGAACCCTCTATATGACTACACTAATCATACCGAAGCAGGAATCAGCATCTAATTCATGTAATGCCACAAATGAGGAGGAAGTTTTCACAATTCTAAATGACAGATCCCTTTATCCCGTTGGATGGATCCATACGCACCCTTCTCAAAGTTGTTTCATGTCATCAGTGGATCTGCACACTCAATATTCCTACCAGGCGATGATTCCTGAGGCATTTGCCATTGTATTGGCACCGACTGATACCTCAAGGAGTTGTGGACTCTTTCGCCTAACCGAACCTGATGGAATGAATATTCTGAAAAATTGTCTGGAGAATGGATTTCATCCGCACAAAGAACCAGATAATGGCAACCCTGTGTATGAGCACTGCTCCAATGTGTACAAAAACTCCAATCTAAGGTTTGAAATCTTTGATTTACGCTAA 708 0.404 MKLHKSFLDHKVTKSSPSPALCCVETVSQDEQNSHITAYNSGDGSTNSDNESSSSKTVRDVHISMRLMEDFLDLAKENTEKDLETCGILGALLEKGTLYMTTLIIPKQESASNSCNATNEEEVFTILNDRSLYPVGWIHTHPSQSCFMSSVDLHTQYSYQAMIPEAFAIVLAPTDTSRSCGLFRLTEPDGMNILKNCLENGFHPHKEPDNGNPVYEHCSNVYKNSNLRFEIFDLR 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g02198 235 Gene3D Cytidine Deaminase, domain 2 39 235 - -
Trre9g02198 235 PANTHER AMSH-LIKE PROTEASE 9 235 - -
Trre9g02198 235 SUPERFAMILY JAB1/MPN domain 61 189 - -
Trre9g02198 235 SMART pad1_6 60 188 IPR000555 GO:0005515|GO:0008233|GO:0008237
Trre9g02198 235 CDD MPN_AMSH_like 59 235 IPR044098 GO:0016579|GO:0061578|GO:0070536|GO:0140492
Trre9g02198 235 FunFam AMSH-like ubiquitin thioesterase 2 41 235 - -
Trre9g02198 235 Pfam JAB1/Mov34/MPN/PAD-1 ubiquitin protease 57 165 IPR000555 GO:0005515|GO:0008233|GO:0008237
Trre9g02198 235 MobiDBLite consensus disorder prediction 35 59 - -
Trre9g02198 235 ProSiteProfiles MPN domain profile. 61 191 IPR037518 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g02198 Trre-Chr9 23672508 23674886 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g02198 K11866 - gmx:100807282 390.963
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre9g02198 9 23672508 23674886 Trre9g02198 9 23672508 23674886 ECH