Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g02187 ATGGGGCTGACATTCACGAAGCTGTTCAGTCGGTTATTCGCGAAGAAGGAAATGAGAATTTTGATGGTTGGTCTCGATGCTGCTGGTAAGACAACTATCCTCTACAAGCTCAAGCTTGGAGAGATCGTCACCACTATTCCTACCATTGGGTTCAATGTGGAGACTGTGGAGTACAAGAACATTAGCTTCACTGTTTGGGATGTCGGAGGCCAGGACAAGATTCGTCCCTTGTGGAGGCACTACTTCCAGAACACTCAGGGTCTTATATTTGTTGTAGACAGCAATGACAGGGACAGAGTTGTTGAGGCCAGAGATGAGTTGCATAGGATGTTGAATGAGGATGAACTGAGAGATGCCGTGTTGCTTGTGTTTGCCAACAAACAAGATCTTCCCAATGCAATGAATGCAGCTGAGATTACTGACAAGCTGGGTCTCCACTCTCTCAGACAGCGCCACTGGTACATCCAGAGCACTTGCGCAACATCTGGGGAAGGTCTTTATGAAGGCATAATGCTTTTTGGGAGTCTTTTGGATCGATATTTCTGGATGCAGAGGTGA 558 0.4677 MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGIMLFGSLLDRYFWMQR 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g02187 185 NCBIfam small GTP-binding protein domain 16 156 IPR005225 GO:0005525
Trre9g02187 185 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 14 170 IPR027417 -
Trre9g02187 185 ProSiteProfiles small GTPase Arf family profile. 11 185 - -
Trre9g02187 185 CDD Arf1_5_like 18 170 IPR045872 GO:0003924
Trre9g02187 185 SMART rab_sub_5 18 151 - -
Trre9g02187 185 SMART sar_sub_1 1 185 IPR006689 GO:0003924|GO:0005525
Trre9g02187 185 Gene3D - 4 179 IPR027417 -
Trre9g02187 185 SMART arf_sub_2 1 181 - -
Trre9g02187 185 Pfam ADP-ribosylation factor family 5 170 IPR006689 GO:0003924|GO:0005525
Trre9g02187 185 PRINTS GTP-binding SAR1 protein signature 74 99 IPR006689 GO:0003924|GO:0005525
Trre9g02187 185 PRINTS GTP-binding SAR1 protein signature 119 140 IPR006689 GO:0003924|GO:0005525
Trre9g02187 185 PRINTS GTP-binding SAR1 protein signature 47 71 IPR006689 GO:0003924|GO:0005525
Trre9g02187 185 PRINTS GTP-binding SAR1 protein signature 19 42 IPR006689 GO:0003924|GO:0005525
Trre9g02187 185 FunFam ADP-ribosylation factor 1 1 179 - -
Trre9g02187 185 PANTHER ADP RIBOSYLATION FACTOR-RELATED 1 171 IPR024156 GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g02187 Trre-Chr9 23509081 23511616 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g02187 K07937 - csv:105435011 343.969
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre9g02187 9 23509081 23511616 Trre9g02187 9 23509081 23511616 ECH