Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g02170 ATGCAAGAACAGTTAGAGGTATGGAAGGAACAAGTTTTTCATATGTGGAATGTGGCAAATGATTATCTTCGTGAGGTTCCTCCCAATCAGCTCTATGCCGCTGCTGCTATTGCGCTTTTCACAACCCTGCTTCTTCTCTTATTGCGGTTTTTGAAGCGCACTAAGTCTAACACCATTGTGTTGACGGGACTTAGTGGGAGCGGGAAAACCGTTATCTTCTATCAGCTTAGGGATGGCTCTACTCATCAGGGTACTGTTACATCAATGGAACCTAATGAAGACACTTTTATTCTTCATGGCGAAACAACGAAGAAGGGGAAGATAAAACCGGTTCATATTGTTGATGTTCCTGGACATTCTCGTCTTCGACCCAAATTGGATGAGTACTTGCCTCAAGCAGCTGGCATAGTCTTTGTTGTTGATGCTTTGGACTTCTTACCAAATTGCCGTGCTGCCTCAGAGTACCTATATGATCTGTTAACTAAGGGAAGTGTTGTGAGGAAGAAGATTCCACTGCTTATTCTCTGCAACAAAACCGACAAAGTCACTGCTCACACCAAAGAATTTATCCGCAGACAAATTGAGAAAGAAATCGACAAATTACGGGTATCAAGAAATGCAGTTTCAGACGCTGACGTTACAAATGAGTTTACTTTGGGGGTACCTGATGAGCCATTTTCCTTTACACAGTGCGCTAACAAAGTTACAACAGCAGATGCTTCTGGTTTAACCGGGGAGATATCTCAGCTAGAAGAGTTTATCAGAGAACATGTGAAGCCATAA 783 0.4266 MQEQLEVWKEQVFHMWNVANDYLREVPPNQLYAAAAIALFTTLLLLLLRFLKRTKSNTIVLTGLSGSGKTVIFYQLRDGSTHQGTVTSMEPNEDTFILHGETTKKGKIKPVHIVDVPGHSRLRPKLDEYLPQAAGIVFVVDALDFLPNCRAASEYLYDLLTKGSVVRKKIPLLILCNKTDKVTAHTKEFIRRQIEKEIDKLRVSRNAVSDADVTNEFTLGVPDEPFSFTQCANKVTTADASGLTGEISQLEEFIREHVKP 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g02170 260 Pfam Signal recognition particle receptor beta subunit 55 235 IPR019009 -
Trre9g02170 260 Gene3D - 51 258 IPR027417 -
Trre9g02170 260 PANTHER TRANSFERRIN 30 256 - -
Trre9g02170 260 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 59 206 IPR027417 -
Trre9g02170 260 ProSiteProfiles small GTPase Arf family profile. 50 254 - -
Trre9g02170 260 CDD SR_beta 57 256 IPR019009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g02170 Trre-Chr9 23261988 23264108 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g02170 3 260 Miscellaneous Gene Families AT5G05670 70.270 1.99e-133 375
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g02170 K12272 - gmx:100800572 424.861
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre9g02170 9 23261988 23264108 Trre9g02170 9 23261988 23264108 ECH