Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g01891 ATGTTTAGTTCAATTTCGCCACACGCTGGTGAAAAACAAGAGAATCAATTGAATTCACCACCTTCAATGGTGAATTCAATTACCGAAACACTAGAAACTGCTCAACCTGGTTCTCCGTTGCCTGATTCTGACGGTGTTTTCGTTCAGGCTCTTCCTCTCGTTAACGACTCTCCTCCGCCGTTAACCGACGCCGTTCTTGTTTACGACGGTGTTCAGAAGGGAGATCCGTACCAGTCAGTTACTTATGAGGTGAACAATGGTTGTGATTCGATTTTGATTTGGCCGGAGGTGGTGGATCGCCAGGGTTGTCGTCCACTGAATTCGTCCCGGGTTTTGGCTGTGCAGCCGGAGGCTTGGGTACCGGCAAATGCTGATGATGATAGCTGGTTGTATGAGGATCTTTTACAGGATGATATTTATGAATCTGATTCTAAAGCTGCGCCATTGATAATTGGAGCTGGGCTTGCCAACCTTGGTAACACATGCTTTCTCAATTCAATTATGCAATGCTTCACGCATACAGTGCCCTTATTGAAATCTATTCTTGATTGCAGCCACTCACATGATGAAGGTTATAAAGGGTACTGTGTTATTTGTGCTTTCCGCTCCCATATGGCACATTCCTTGCAGTCTACTGGAAGAGTTATCTCCCCTTATATACTTGTGGATAATTTGCATCATTTTAATTCTATATTTGGAAGATATCAGCAAGAGGATGTACATGAGTTTATGACATGTGCATTGAATAAACTTGATTCATGTTTTTTAAATCTGAAGAAGAATAATCCAAATTTTGAGGACACTACTATTGTTCAGAAAGTTTTTGGTGGCAAGCTGGCTAGCAAGCTCCGATGTTGTAGCTGTGGTTTCGCTTCTGACAGAAGTGATCCAATTGCTGACTTGAGTTTAGGATTAGAAAATGTAGATGCTCTTTCAAGTGCTTTAGAATATTTCACTAGGGTGGAGAACTTGGACGGAAAGTTTAAATGTGACAGCTGCAAAGAGGAAGTGTCTAAGGACCAACAATATATGTTTGATCAGACACCTACTATTGCTGCATTCCATTTAAAGAGGTTTAAGTCGGATGGGATTTTTTATGAAAAGATTGACAAGTATATCAGTTTTCCTTTGGAGTTGGACTTGCAACCCTACACCATTTTGAATGAAAACAATGATGTATCATTGAAATATGATCTATATGCAGTTGTTGTGCATACTGGTTTTTCAGCTAAGTCAGGTCATTACTTCTGCTTTGTCCGTACTGCTCCAGACACATGGCATAAGCTGGATGATTCAAAGGTTACTAAGGTATCAGAAGAAACTGTGCTGTCTCAGCAAGCATACATTCTGTTTTATGCTCGACAGGGTACACCTTGGTTTTCAAAATTTGTAGAAACTACGACTACACTCTTGGAACGGTGTAATACGTCTCCCAAGTCTGTTTTAGACATCACAGATGGCCAGGATAAATCATTTCCTATTTTAAATGAAAATATTGAGAGGAGTGGCGTTGGTGAATCCAAAGAATTGACAGATGGCCAGAATAAATCATTTCCTATTCTTAATGGAAATATTGAGAGGAGTGGGGCTGGTGAATCCAAAGAATTTCCCAAGAAGTTTGATTATTCTGGTCAACAAAGTTGTGAGTTTCTTGAAACTGATGATGTTATTTATGCTTCTCCTTGCCGTGAACAATTTCCTGCCGGGCCACCAAATAAAAAAACTCTTAATTTGAATGGATCTGAAGATATAAATGCCCAAGTGCAACCTTTGAATGGTACCAGCTTGACTAAAAGTGCAAAGCCTGGTGGGAGTTCATATGCTGAGAATGCTGCTCCTGATAAAAACAAACGCAGTCTGGATGTTTTTGATTTTACAGAGAATGACGGTTTCAATCCTTTAACTCCTCCCAACTCGCCACCTTATCAGACACCAGGTAAGAGTTTCCAGATCTCACGCGATCATCTGAAGACTGAGAATCAAGGGAGCGGTAAAAGATCATCATCAAATAAGTCCAATAAGTCAAATAAATCAACAGATAGAGCTGAAACAAAAGCTGCCATCACATATGTTAAGAAGATGCATGGTTCAAGGAGATGTGCATTACTTGAATACCTTGATGCTAGTCCAAGCAACAGCAAAGCCTCCTCTGAGAACAAGAGAAAAAAGACTGATTCATCGCAGTCTGACAAAGGCAACGGCAGTGCTCGCAAGAAATCAAGCCATGCTTCTGTCGCCGCCTACCCTGTGGCCGGAATTTCACAGTGA 2268 0.4096 MFSSISPHAGEKQENQLNSPPSMVNSITETLETAQPGSPLPDSDGVFVQALPLVNDSPPPLTDAVLVYDGVQKGDPYQSVTYEVNNGCDSILIWPEVVDRQGCRPLNSSRVLAVQPEAWVPANADDDSWLYEDLLQDDIYESDSKAAPLIIGAGLANLGNTCFLNSIMQCFTHTVPLLKSILDCSHSHDEGYKGYCVICAFRSHMAHSLQSTGRVISPYILVDNLHHFNSIFGRYQQEDVHEFMTCALNKLDSCFLNLKKNNPNFEDTTIVQKVFGGKLASKLRCCSCGFASDRSDPIADLSLGLENVDALSSALEYFTRVENLDGKFKCDSCKEEVSKDQQYMFDQTPTIAAFHLKRFKSDGIFYEKIDKYISFPLELDLQPYTILNENNDVSLKYDLYAVVVHTGFSAKSGHYFCFVRTAPDTWHKLDDSKVTKVSEETVLSQQAYILFYARQGTPWFSKFVETTTTLLERCNTSPKSVLDITDGQDKSFPILNENIERSGVGESKELTDGQNKSFPILNGNIERSGAGESKEFPKKFDYSGQQSCEFLETDDVIYASPCREQFPAGPPNKKTLNLNGSEDINAQVQPLNGTSLTKSAKPGGSSYAENAAPDKNKRSLDVFDFTENDGFNPLTPPNSPPYQTPGKSFQISRDHLKTENQGSGKRSSSNKSNKSNKSTDRAETKAAITYVKKMHGSRRCALLEYLDASPSNSKASSENKRKKTDSSQSDKGNGSARKKSSHASVAAYPVAGISQ 755
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g01891 755 SUPERFAMILY Cysteine proteinases 151 454 IPR038765 -
Trre9g01891 755 MobiDBLite consensus disorder prediction 593 684 - -
Trre9g01891 755 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 102 455 - -
Trre9g01891 755 MobiDBLite consensus disorder prediction 707 755 - -
Trre9g01891 755 Pfam Ubiquitin carboxyl-terminal hydrolase 154 452 IPR001394 GO:0004843|GO:0016579
Trre9g01891 755 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 153 455 IPR028889 -
Trre9g01891 755 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 397 415 IPR018200 GO:0004843|GO:0006511
Trre9g01891 755 Gene3D Cysteine proteinases 152 460 - -
Trre9g01891 755 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 154 169 IPR018200 GO:0004843|GO:0006511
Trre9g01891 755 MobiDBLite consensus disorder prediction 1 25 - -
Trre9g01891 755 FunFam Ubiquitin carboxyl-terminal hydrolase 20 149 458 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g01891 Trre-Chr9 18264325 18268111 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g01891 148 454 Miscellaneous Gene Families AT4G31670 35.759 5.54e-54 195
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g01891 K11855 - gmx:100808015 552.747
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre9g01891 9 18264325 18268111 Trre9g01891 9 18264325 18268111 ECH